Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq10050 109 4e-19 seq11547 96.9 2e-15 >seq10050 Length=29434 Score = 109 bits (120), Expect = 4e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| ||||||||||| | |||| || |||||||| ||||| || ||||| || || Sbjct 22562 GTGATGTGGGCGATCATGTATGTTAGAAGTGAATAGCTGGCAATATTGAAAGGTACTCCC 22503 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || ||||| ||| | || | ||||| | ||||||||| |||| ||||| |||||||| Sbjct 22502 AGCCCCATGTCACCAGAGCGCTGATAAAGCTGACAGGACAGCTCACCATCGCACACATAG 22443 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271 ||||||| | | || || ||||||| ||||| Sbjct 22442 AACTGACAAAGAGCGTGGCATGGGGGCAGAGCCAT 22408 >seq11547 Length=21244 Score = 96.9 bits (106), Expect = 2e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| ||||||||||| | |||| || | |||||||||||| | ||||| || || Sbjct 14638 GTGATGTGGGCGATCATGTATGTTACAAGTGCATAGCTAGCAATACTGAAAGGTACTCCC 14579 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 || ||||| ||| | || | |||| | ||||||||| |||| ||||| | |||||| Sbjct 14578 AGCCCCATGTCACCAGAGCGCTGATTAAGCTGACAGGACAGCTCACCATCGCTCACATAG 14519 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 ||||||| | | || || ||||||| ||||| ||| | |||| Sbjct 14518 AACTGACAAAGAGCCTGGCATGGGGGCAGAGCCATGAGTGGCAAATCT 14471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346586786323340