Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014-
12-02] 46,662 sequences; 679,761,122 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq11038 320 1e-82
seq15624 120 3e-22
>seq11038
Length=78219
Score = 320 bits (354), Expect = 1e-82
Identities = 882/1345 (66%), Gaps = 31/1345 (2%)
Strand=Plus/Plus
Query 22388 ATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGA 22447
|||||| ||| || ||| |||||||||| || | || | || || | ||||
Sbjct 22155 ATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCGTTCAGTGAGGTCCTTCAGCAGA 22214
Query 22448 TGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTG 22507
|| |||| || | |||||||| || || | ||| | ||| ||| |||||| |||
Sbjct 22215 TGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTGTGTAGATGTTGCTGGTG 22274
Query 22508 AACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGC 22567
| | ||||| || |||||||| || ||||| || || || || || || ||||| ||
Sbjct 22275 TAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAGGCTGTGGGCATGGGG 22334
Query 22568 GCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAG 22627
||||||| || |||||||| ||||| || | ||| || ||| |||| | ||||
Sbjct 22335 GCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAG 22394
Query 22628 TCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTC 22687
||||| || || | ||| || || |||||||| || || |||| | ||| | ||||
Sbjct 22395 TCCCAGAGCTCAGTGGGC---ACCTTTTCCCACATGTCATACTGCAGAATGCCTCTACTC 22451
Query 22688 GCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCC 22747
| || |||| ||| || || || || |||| | | | || | || ||||| |||
Sbjct 22452 ACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTGCCAACTCCCAGCTTGCC 22511
Query 22748 TCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC--GGCGA 22805
|||| || | || || || ||||| ||||| || | | |||| || || |||
Sbjct 22512 TCCAGGGCAGCATAGTAGATGGTCTCAAAGAT---CTGGAT--ATTCAGCAGCTGGGCTT 22566
Query 22806 C---GCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTA 22862
| |||||| | || |||||| | | ||| || || || | |||||| || || |
Sbjct 22567 CAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCAA 22626
Query 22863 TACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCG 22922
| ||||| || | || | || || | ||| || || | || || | ||
Sbjct 22627 TCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAA 22686
Query 22923 AATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNT 22979
|| || | |||| | |||||| |||||| || || | |
Sbjct 22687 TGTCAATGATCTTGTTGAGGTTTCTT---ACAATTACTTTAGTGACCGAGGCAAGCTTTT 22743
Query 22980 CAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATT 23037
||||| ||| | || | | |||| || |||||| || || ||||| | ||
Sbjct 22744 TGAAGTC--AAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGCAATGGAGGCCAAGTT 22801
Query 23038 GCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACA 23097
|| |||||||| || |||||| || ||||| ||||| || || || | || || ||
Sbjct 22802 ACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCA 22861
Query 23098 CTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCAT 23157
|| || ||||||||||| |||||| || || | || || | ||| ||||| | |||
Sbjct 22862 TTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACAT 22921
Query 23158 GTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT- 23216
||| || || || || || ||| ||||||||||| || ||||| |||||| |
Sbjct 22922 GTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACCACAACTGCTGAGCCTT 22981
Query 23217 GAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGG 23276
|| ||| ||| || || || | || || | ||| | | ||||| ||
Sbjct 22982 GACCACC-CGCTTCACTCTACCCTCCTGTTCATATTGAGTGTAGAGCTTCTCAAACTCCT 23040
Query 23277 CACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGT 23336
| || |||| || ||| || || | | | || ||||| ||| ||| ||
Sbjct 23041 CCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACATCAGAGACCAGTCCTGGT 23100
Query 23337 CATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396
||||| || | |||| || ||||| || |||||||| || ||||| || || || |
Sbjct 23101 TGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTG 23160
Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456
| | | ||||||||| || |||||||| |||| || | ||||| ||||| || |
Sbjct 23161 CCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGAAGTCAAACACATCAAAGT 23220
Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516
|||| ||||| ||||| | |||||| || ||||||| |||||||| || || || ||||
Sbjct 23221 GCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTATTGCCACCTTGGTCCACGT 23280
Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576
| || || ||||||||||||||||| ||||||||||| || || || || || |
Sbjct 23281 AGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGCCATTTGAGTTACCATTTG 23340
Query 23577 CGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTC 23633
|| || | ||| |||| ||| || || | ||| | ||| || ||||
Sbjct 23341 TTCCAGCAATGTAACT---ACCTGTTGATCTAATACAGCTAACTGCTACACCAATCCCTC 23397
Query 23634 CGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGT 23693
| | ||||| || || | || |||||||| || || || || ||||| || |||||||
Sbjct 23398 CTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAATGCCATCAATGCTGT 23457
Query 23694 CCTCTTTGGTCGCGACCAAGAAACA 23718
| || || | || | || ||| ||
Sbjct 23458 CATCCTTCATGGCCAGCAGGAAGCA 23482
>seq15624
Length=12484
Score = 120 bits (132), Expect = 3e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399
|||| || || ||||||||||||| || ||||| ||||| ||||||| || ||||| |
Sbjct 12267 TTTCCACACGCTTCATAAAAAGATCTGGGATCCACAGAGCAAAGAACAGATCACGGGCTC 12326
Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459
||||||||| |||||||| || || || || | ||| || || || || |||||
Sbjct 12327 TTTGCTCCTCTTTACCGGTGTTTTTCTTTAAGTCAAGAAACTCAAATACATCAAAATGCC 12386
Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
| ||||||||||| || ||||| || || |||||||
Sbjct 12387 ATGGCTCGAGGTAGACTGCAAATGCCCCAGGTCTCT 12422
Score = 107 bits (118), Expect = 2e-18
Identities = 118/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| ||||| |||||||| || || || || ||||| | || || |||
Sbjct 11837 ACCTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTG 11896
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|| | ||| ||||||||| || | |||||| | ||| |||||||||||||| || ||
Sbjct 11897 CCTAGATTCTGCTGGTTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTA 11956
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204
|||||||| ||| ||||| || || || |||||
Sbjct 11957 CCCGTCTCTGTCTGTGACTCAATAATGGCATACCACA 11993
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445506395603040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |