Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11038 320 1e-82 seq15624 120 3e-22 >seq11038 Length=78219 Score = 320 bits (354), Expect = 1e-82 Identities = 882/1345 (66%), Gaps = 31/1345 (2%) Strand=Plus/Plus Query 22388 ATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGA 22447 |||||| ||| || ||| |||||||||| || | || | || || | |||| Sbjct 22155 ATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCGTTCAGTGAGGTCCTTCAGCAGA 22214 Query 22448 TGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTG 22507 || |||| || | |||||||| || || | ||| | ||| ||| |||||| ||| Sbjct 22215 TGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTGTGTAGATGTTGCTGGTG 22274 Query 22508 AACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGC 22567 | | ||||| || |||||||| || ||||| || || || || || || ||||| || Sbjct 22275 TAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAGGCTGTGGGCATGGGG 22334 Query 22568 GCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAG 22627 ||||||| || |||||||| ||||| || | ||| || ||| |||| | |||| Sbjct 22335 GCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAG 22394 Query 22628 TCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTC 22687 ||||| || || | ||| || || |||||||| || || |||| | ||| | |||| Sbjct 22395 TCCCAGAGCTCAGTGGGC---ACCTTTTCCCACATGTCATACTGCAGAATGCCTCTACTC 22451 Query 22688 GCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCC 22747 | || |||| ||| || || || || |||| | | | || | || ||||| ||| Sbjct 22452 ACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTGCCAACTCCCAGCTTGCC 22511 Query 22748 TCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGC--GGCGA 22805 |||| || | || || || ||||| ||||| || | | |||| || || ||| Sbjct 22512 TCCAGGGCAGCATAGTAGATGGTCTCAAAGAT---CTGGAT--ATTCAGCAGCTGGGCTT 22566 Query 22806 C---GCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTA 22862 | |||||| | || |||||| | | ||| || || || | |||||| || || | Sbjct 22567 CAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCAA 22626 Query 22863 TACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCG 22922 | ||||| || | || | || || | ||| || || | || || | || Sbjct 22627 TCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAA 22686 Query 22923 AATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT---TTCGTTATNNNNNNNNNNNNNT 22979 || || | |||| | |||||| |||||| || || | | Sbjct 22687 TGTCAATGATCTTGTTGAGGTTTCTT---ACAATTACTTTAGTGACCGAGGCAAGCTTTT 22743 Query 22980 CAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATT 23037 ||||| ||| | || | | |||| || |||||| || || ||||| | || Sbjct 22744 TGAAGTC--AAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGCAATGGAGGCCAAGTT 22801 Query 23038 GCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACA 23097 || |||||||| || |||||| || ||||| ||||| || || || | || || || Sbjct 22802 ACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCA 22861 Query 23098 CTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCAT 23157 || || ||||||||||| |||||| || || | || || | ||| ||||| | ||| Sbjct 22862 TTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACAT 22921 Query 23158 GTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGT- 23216 ||| || || || || || ||| ||||||||||| || ||||| |||||| | Sbjct 22922 GTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACCACAACTGCTGAGCCTT 22981 Query 23217 GAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGG 23276 || ||| ||| || || || | || || | ||| | | ||||| || Sbjct 22982 GACCACC-CGCTTCACTCTACCCTCCTGTTCATATTGAGTGTAGAGCTTCTCAAACTCCT 23040 Query 23277 CACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGT 23336 | || |||| || ||| || || | | | || ||||| ||| ||| || Sbjct 23041 CCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACATCAGAGACCAGTCCTGGT 23100 Query 23337 CATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGG 23396 ||||| || | |||| || ||||| || |||||||| || ||||| || || || | Sbjct 23101 TGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTG 23160 Query 23397 CGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCAT 23456 | | | ||||||||| || |||||||| |||| || | ||||| ||||| || | Sbjct 23161 CCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGAAGTCAAACACATCAAAGT 23220 Query 23457 GCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGT 23516 |||| ||||| ||||| | |||||| || ||||||| |||||||| || || || |||| Sbjct 23221 GCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTATTGCCACCTTGGTCCACGT 23280 Query 23517 AACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTA 23576 | || || ||||||||||||||||| ||||||||||| || || || || || | Sbjct 23281 AGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGCCATTTGAGTTACCATTTG 23340 Query 23577 CGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTC 23633 || || | ||| |||| ||| || || | ||| | ||| || |||| Sbjct 23341 TTCCAGCAATGTAACT---ACCTGTTGATCTAATACAGCTAACTGCTACACCAATCCCTC 23397 Query 23634 CGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGT 23693 | | ||||| || || | || |||||||| || || || || ||||| || ||||||| Sbjct 23398 CTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAATGCCATCAATGCTGT 23457 Query 23694 CCTCTTTGGTCGCGACCAAGAAACA 23718 | || || | || | || ||| || Sbjct 23458 CATCCTTCATGGCCAGCAGGAAGCA 23482 >seq15624 Length=12484 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || || ||||||||||||| || ||||| ||||| ||||||| || ||||| | Sbjct 12267 TTTCCACACGCTTCATAAAAAGATCTGGGATCCACAGAGCAAAGAACAGATCACGGGCTC 12326 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 ||||||||| |||||||| || || || || | ||| || || || || ||||| Sbjct 12327 TTTGCTCCTCTTTACCGGTGTTTTTCTTTAAGTCAAGAAACTCAAATACATCAAAATGCC 12386 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 | ||||||||||| || ||||| || || ||||||| Sbjct 12387 ATGGCTCGAGGTAGACTGCAAATGCCCCAGGTCTCT 12422 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| ||||| |||||||| || || || || ||||| | || || ||| Sbjct 11837 ACCTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTG 11896 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | ||| ||||||||| || | |||||| | ||| |||||||||||||| || || Sbjct 11897 CCTAGATTCTGCTGGTTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTA 11956 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 |||||||| ||| ||||| || || || ||||| Sbjct 11957 CCCGTCTCTGTCTGTGACTCAATAATGGCATACCACA 11993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445506395603040