Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014-
12-02] 46,662 sequences; 679,761,122 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq11038 623 1e-173
seq15624 122 1e-22
seq19576 86.0 8e-12
>seq11038
Length=78219
Score = 623 bits (690), Expect = 1e-173
Identities = 1332/1979 (67%), Gaps = 31/1979 (2%)
Strand=Plus/Plus
Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353
||| ||||||||| | | || ||| ||||||| ||||| || ||||| | |
Sbjct 22133 CTGTATGGATCCATTTTGAGCAATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 22192
Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413
|| || | | | || ||||| ||||| || | || || |||||||| | |||||
Sbjct 22193 TTCAGTGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCT 22252
Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473
|| ||||| || || ||||| || | ||| | |||||||| || || | ||||| ||
Sbjct 22253 ACGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGC 22312
Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533
|| || || || ||||| || |||| ||| | ||| ||||| | ||||| | | ||
Sbjct 22313 TGTGGAGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAAT 22372
Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATA 62593
|| || || || | | ||| | ||| || || | || || |||
Sbjct 22373 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATA 22432
Query 62594 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTC 62653
|| ||||| || |||| | || ||| ||||| ||||| || || || || ||
Sbjct 22433 CTGCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTC 22492
Query 62654 AGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713
|| | | || || ||||| | ||| | || || ||||| |||||||||| ||||
Sbjct 22493 TGCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATT 22552
Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773
|| || ||||| ||||| |||||||||||| | ||| || || || || || |
Sbjct 22553 CAGCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAG 22612
Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833
|| || |||||||| ||||| || || || | ||| || || | || ||||| ||||
Sbjct 22613 ACCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC 22672
Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA- 62889
|| || || ||||| || || || || ||||| ||||| ||||||||||| ||||
Sbjct 22673 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGA 22732
Query 62890 --CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGC 62944
|| ||| ||||| | ||||| | || | ||| ||||||| | ||
Sbjct 22733 GGCAAGCTT---TTTGA---AGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGC 22786
Query 62945 AACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCA 63002
|| || |||| ||||| ||||| || |||| | || | | ||| | | ||||||
Sbjct 22787 AATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTT--GTATACTCCACAATCTCA 22844
Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062
||||| | ||||| || ||||| || || ||||| || || |||||||| |||||||
Sbjct 22845 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 22904
Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122
||||| || || | ||| | || || || ||||| ||||||| || || || || | |
Sbjct 22905 GCATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATAC 22964
Query 63123 CAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATA 63181
|| | | || ||||||| | | || ||| | || ||| ||| |||| ||
Sbjct 22965 CACAACTGCT-GAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATTGAGTGTA 23023
Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACAT 63241
| || ||||| || |||||| | ||||| | ||| || ||| || |||||
Sbjct 23024 GAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACAT 23083
Query 63242 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63301
|| ||||| || || | | ||| | ||||| || |||||||| ||||| || ||
Sbjct 23084 CAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGC 23143
Query 63302 TATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360
||| || || |||| || || || ||||| || || || ||||| || || || ||||
Sbjct 23144 -ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGA 23202
Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420
| | | | |||| | ||||| || |||| ||||||||| | | | || || ||||| |
Sbjct 23203 AGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTAT 23262
Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480
| || || || || | ||| | |||||||| || || ||||||| ||| || | || |
Sbjct 23263 TGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGC 23322
Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTG 63540
| ||||| ||||||| || || | || || | || | | | |||| |||| ||
Sbjct 23323 CATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAACTG 23382
Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600
|| ||| || || ||||| ||||||||| | || ||| |||| | || ||||| |
Sbjct 23383 CTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAA 23442
Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660
|||| || ||||| ||||| ||||| || || || ||||| || | ||| | | |
Sbjct 23443 TGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTAT 23502
Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720
| || || || || || | || ||||| || || || ||||| || ||||| || || |
Sbjct 23503 TGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGT 23562
Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780
|||| |||||||| |||| |||||||| | || ||||| || || || | ||| |
Sbjct 23563 TGTAGGTCTCAATGGCTGCATCTATATCAGTGTTGTGGATTCCAACAGCTACTCTCATGA 23622
Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840
||||||||| || | ||| | | ||| || ||||||| || |||||| || |
Sbjct 23623 GCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTCTA 23682
Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 63900
| || ||||| ||||| | ||||| ||||| || | || ||||| ||| | || ||||
Sbjct 23683 ATGTCTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGA 23742
Query 63901 GCTTATCCTTATATTTGTTA--ACTATATCCATGGTAATACTTG--AAATAATCGGAGAA 63956
| || || | ||| | || ||||| | ||| |||| | || || || ||
Sbjct 23743 GGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGGAG 23798
Query 63957 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 64016
|| | |||| |||||| ||||||| ||| | ||||||||| || ||||| || |
Sbjct 23799 TGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACATCACTGAACACC 23858
Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076
|| || || || || || || || || | || || | || || || |||||||||||
Sbjct 23859 TTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATCCGTGCAGCCAGGATGGCATAATCT 23918
Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136
|| || | || || ||||| || || || || || || |||||||| || || ||
Sbjct 23919 GGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACAGTG 23978
Query 64137 GTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGA 64196
|| ||||| | || | ||||| || |||||||| | |||| | || || | |
Sbjct 23979 GTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAAC 24038
Query 64197 TCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255
|| | || | ||||| || | || || ||||| ||||||||||||||||||||
Sbjct 24039 TCTGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 24097
>seq15624
Length=12484
Score = 122 bits (134), Expect = 1e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
||||||| ||||| ||||| || | ||||||||| ||| || ||||| || ||| | |
Sbjct 11343 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 11402
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
|||||||||| ||||| |||| | || |||| || || | || || |||||||
Sbjct 11403 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCACTTTCGAATGGAT 11462
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
|| | |||||| || |||||||| | || ||||||||||| || |||||||| || |
Sbjct 11463 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGTCTGTGGC 11522
Query 62806 TCTTATTAGA 62815
| | |||||
Sbjct 11523 GCATGTTAGA 11532
>seq19576
Length=429644
Score = 86.0 bits (94), Expect = 8e-12
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335
|||||||| || | ||||| ||||| ||||||| ||||| || || || |||||||||
Sbjct 417714 GACATAACACCAAACTTTTGATATTCTGCCACACGCTTTTCAAAGAAGTTGGTTTTTCCT 417655
Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382
|| | ||| || |||||||| ||||||||||| | |||||||
Sbjct 417654 TCTAGTGAGATCGACTCCATGAAGTCAAACGGATTCTCAGCATTGTA 417608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629450243139360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |