Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11038 623 1e-173 seq15624 122 1e-22 seq19576 86.0 8e-12 >seq11038 Length=78219 Score = 623 bits (690), Expect = 1e-173 Identities = 1332/1979 (67%), Gaps = 31/1979 (2%) Strand=Plus/Plus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 ||| ||||||||| | | || ||| ||||||| ||||| || ||||| | | Sbjct 22133 CTGTATGGATCCATTTTGAGCAATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 22192 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 || || | | | || ||||| ||||| || | || || |||||||| | ||||| Sbjct 22193 TTCAGTGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCT 22252 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 22253 ACGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGC 22312 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || ||||| || |||| ||| | ||| ||||| | ||||| | | || Sbjct 22313 TGTGGAGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAAT 22372 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATA 62593 || || || || | | ||| | ||| || || | || || ||| Sbjct 22373 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATA 22432 Query 62594 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTC 62653 || ||||| || |||| | || ||| ||||| ||||| || || || || || Sbjct 22433 CTGCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTC 22492 Query 62654 AGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713 || | | || || ||||| | ||| | || || ||||| |||||||||| |||| Sbjct 22493 TGCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATT 22552 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62773 || || ||||| ||||| |||||||||||| | ||| || || || || || | Sbjct 22553 CAGCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAG 22612 Query 62774 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62833 || || |||||||| ||||| || || || | ||| || || | || ||||| |||| Sbjct 22613 ACCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC 22672 Query 62834 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA- 62889 || || || ||||| || || || || ||||| ||||| ||||||||||| |||| Sbjct 22673 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGA 22732 Query 62890 --CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGC 62944 || ||| ||||| | ||||| | || | ||| ||||||| | || Sbjct 22733 GGCAAGCTT---TTTGA---AGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGC 22786 Query 62945 AACAGATGCCAGATTACACACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCA 63002 || || |||| ||||| ||||| || |||| | || | | ||| | | |||||| Sbjct 22787 AATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTT--GTATACTCCACAATCTCA 22844 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||||| | ||||| || ||||| || || ||||| || || |||||||| ||||||| Sbjct 22845 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 22904 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 ||||| || || | ||| | || || || ||||| ||||||| || || || || | | Sbjct 22905 GCATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATAC 22964 Query 63123 CAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATA 63181 || | | || ||||||| | | || ||| | || ||| ||| |||| || Sbjct 22965 CACAACTGCT-GAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATTGAGTGTA 23023 Query 63182 CAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACAT 63241 | || ||||| || |||||| | ||||| | ||| || ||| || ||||| Sbjct 23024 GAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACAT 23083 Query 63242 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63301 || ||||| || || | | ||| | ||||| || |||||||| ||||| || || Sbjct 23084 CAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGC 23143 Query 63302 TATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 ||| || || |||| || || || ||||| || || || ||||| || || || |||| Sbjct 23144 -ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGA 23202 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGT 63420 | | | | |||| | ||||| || |||| ||||||||| | | | || || ||||| | Sbjct 23203 AGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTAT 23262 Query 63421 TTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATAC 63480 | || || || || | ||| | |||||||| || || ||||||| ||| || | || | Sbjct 23263 TGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGC 23322 Query 63481 CGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTG 63540 | ||||| ||||||| || || | || || | || | | | |||| |||| || Sbjct 23323 CATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAACTG 23382 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 || ||| || || ||||| ||||||||| | || ||| |||| | || ||||| | Sbjct 23383 CTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAA 23442 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 |||| || ||||| ||||| ||||| || || || ||||| || | ||| | | | Sbjct 23443 TGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTAT 23502 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 | || || || || || | || ||||| || || || ||||| || ||||| || || | Sbjct 23503 TGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGT 23562 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780 |||| |||||||| |||| |||||||| | || ||||| || || || | ||| | Sbjct 23563 TGTAGGTCTCAATGGCTGCATCTATATCAGTGTTGTGGATTCCAACAGCTACTCTCATGA 23622 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 ||||||||| || | ||| | | ||| || ||||||| || |||||| || | Sbjct 23623 GCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTCTA 23682 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 63900 | || ||||| ||||| | ||||| ||||| || | || ||||| ||| | || |||| Sbjct 23683 ATGTCTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGA 23742 Query 63901 GCTTATCCTTATATTTGTTA--ACTATATCCATGGTAATACTTG--AAATAATCGGAGAA 63956 | || || | ||| | || ||||| | ||| |||| | || || || || Sbjct 23743 GGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGGAG 23798 Query 63957 TGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 64016 || | |||| |||||| ||||||| ||| | ||||||||| || ||||| || | Sbjct 23799 TGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACATCACTGAACACC 23858 Query 64017 ttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCC 64076 || || || || || || || || || | || || | || || || ||||||||||| Sbjct 23859 TTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATCCGTGCAGCCAGGATGGCATAATCT 23918 Query 64077 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 64136 || || | || || ||||| || || || || || || |||||||| || || || Sbjct 23919 GGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACAGTG 23978 Query 64137 GTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGA 64196 || ||||| | || | ||||| || |||||||| | |||| | || || | | Sbjct 23979 GTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAAC 24038 Query 64197 TCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64255 || | || | ||||| || | || || ||||| |||||||||||||||||||| Sbjct 24039 TCTGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 24097 >seq15624 Length=12484 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 ||||||| ||||| ||||| || | ||||||||| ||| || ||||| || ||| | | Sbjct 11343 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 11402 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 |||||||||| ||||| |||| | || |||| || || | || || ||||||| Sbjct 11403 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCACTTTCGAATGGAT 11462 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 || | |||||| || |||||||| | || ||||||||||| || |||||||| || | Sbjct 11463 AACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGTCTGTGGC 11522 Query 62806 TCTTATTAGA 62815 | | ||||| Sbjct 11523 GCATGTTAGA 11532 >seq19576 Length=429644 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 |||||||| || | ||||| ||||| ||||||| ||||| || || || ||||||||| Sbjct 417714 GACATAACACCAAACTTTTGATATTCTGCCACACGCTTTTCAAAGAAGTTGGTTTTTCCT 417655 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA 33382 || | ||| || |||||||| ||||||||||| | ||||||| Sbjct 417654 TCTAGTGAGATCGACTCCATGAAGTCAAACGGATTCTCAGCATTGTA 417608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629450243139360