Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11038 307 1e-78 seq19576 98.7 9e-16 >seq11038 Length=78219 Score = 307 bits (340), Expect = 1e-78 Identities = 988/1519 (65%), Gaps = 13/1519 (1%) Strand=Plus/Plus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || ||||| ||||||| |||||| |||||||| | ||||| | ||| || || ||||| Sbjct 22212 AGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTGTGTAGATGTTGCTG 22271 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| ||||||||||| || | | |||||| | ||| || || || ||||| Sbjct 22272 GTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAGGCTGTGGGCATG 22331 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | | || || ||||||| || ||| || ||| ||| || || ||| Sbjct 22332 GGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTC 22391 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | || || || |||| |||||| ||||| || ||||| ||| ||||| Sbjct 22392 CAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATACTGCAGAATGCCTCTACTC 22451 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 ||||||| | |||||||||||||| || | ||| || | || || || | Sbjct 22452 ACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTGCCAACTCCCAGCTTGCC 22511 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || || ||||| || || || || || || || ||||| | | | ||||| | Sbjct 22512 TCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGGG 22571 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || || |||| ||| | || | || || |||| || | |||||| ||||| || || Sbjct 22572 CTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCAATCCCG 22631 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || || || ||| || || | | ||| ||||| || || || || || Sbjct 22632 ATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAATGTCA 22691 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CA 37660 || || || || || ||| | || | || ||| || | | ||| | ||| || Sbjct 22692 ATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGAGGCAAGCTTTTTGAAGTCA 22751 Query 37661 TAAATACGTT-ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 | | |||| | ||||| | | | | | ||| || | | ||||| || || Sbjct 22752 AAGGTGCGTTCCGGAGTAACATACATGTTGAGAGCAATGGAGGCCAAGTTACAGACGGCC 22811 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 |||||||||| | | || | | | |||||| || || | ||||| || | || || Sbjct 22812 ACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATGGTG 22871 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||||||| || || || | ||||| | |||||| || | || || || ||| Sbjct 22872 CCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGTGTT 22931 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGATCGC 37898 ||| |||| | |||| |||||| || | | ||| |||| || || || || | | Sbjct 22932 CCTGTTTCTGTCTGAGACTCGATGATGGCATACCA-CAACTGCTGAGCCTTGACCACCCG 22990 Query 37899 TTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATAC 37958 || | | | || ||| |||| | || | || | ||| || | |||||| || Sbjct 22991 CTTCACTCTACCCTCCTGTTCATATTGAGTGTAGAGCTTCTCAAACTCCTCCCCCCA-AC 23049 Query 37959 ATCGCAT--AATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 | | ||| || || || || || | || ||||| |||||||| || | | ||||| Sbjct 23050 A-CTCATCCAACCCAGGGCACTCACTGGGGCACATCAGAGACCAGTCCTGGTTGTTTTCC 23108 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || | | ||| || | |||||| | ||||| ||| || | ||| | || | Sbjct 23109 ACCCTCTTCATGAACAGATCAGGGATCCATAGGGCATAGAAGAGGTCTCGTGCCCTCTGC 23168 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGG 38135 || || || || ||| ||||| |||| || || || || | |||| ||||||||| Sbjct 23169 TCCTCTTTACCAGTGTTC-TTCTTCAGCTCAAGGAAGTCAAACACATCAAAGTGCCATGG 23227 Query 38136 TTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAAC 38195 || | || || | | || || |||| ||||| || || || | | || | | Sbjct 23228 CTCCAGGTATATGGCAAAAGCACCCGGTCGTTTATTGCCACCTTGGTCCACGTAGCGTGC 23287 Query 38196 TGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGA 38255 ||||| || || | ||| | ||| || || | ||||| || || || ||| | || | Sbjct 23288 GGTGTTGTTGTACACTCTCAGCATCGGCACAAGGCCATTTGAGTTACCATTTGTTCCAGC 23347 Query 38256 TATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTT 38315 || ||| |||| | | || ||| || | | | || || || |||||| ||| Sbjct 23348 AATGTAACTACCTGTTGATCTAATACAGCTAACTGCTACACCAATCCCTCCTGCAGATTT 23407 Query 38316 TGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTAT 38375 || || | ||| |||||||| | |||||| | || || || || ||||||||||| || Sbjct 23408 AGAGATGAGAGCACATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTTCAT 23467 Query 38376 TGGTAGTATAAAACAACTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAG 38434 | || | || || || || | || || | || | || || ||||| || | || | Sbjct 23468 GGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTATTG-GTGCCTGCGTTGAACAGAGTGG 23526 Query 38435 GAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTA 38494 |||| ||||| ||||||| || || |||| || || || || || | |||||| Sbjct 23527 GAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCTA 23586 Query 38495 TATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTA 38554 ||||| | ||| || || | || ||| ||||| ||||| || ||||| | || | Sbjct 23587 TATCAGTGTTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGGGCGCTCAGCCA 23646 Query 38555 TTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTAT 38614 |||| ||| ||| || || || || |||||||| || | ||||| || | | Sbjct 23647 CTTTACCATTGATTTTCAGCAGGTAGGAGCGCTCTAATGTCTTAAAGCCAAAGAAATTGT 23706 Query 38615 ATGAATAATCTCTATCGTA 38633 | ||| |||| ||||| || Sbjct 23707 AAGAAAAATCCCTATCATA 23725 >seq19576 Length=429644 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| ||| | || | || ||||| | || | ||||| Sbjct 417019 TCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGCCCAGGCATTAGACCCCTCTTTTTC 416960 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||| | || || ||||| || ||||| ||||| |||||||| |||||||||||||| Sbjct 416959 AGCCAATAAATGGCGGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATGCC 416900 Query 11774 ACTACTCTTTCTCC 11787 || | |||||| || Sbjct 416899 ACAATTCTTTCACC 416886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468251521197280