Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11038 637 6e-178 seq15624 116 5e-21 seq19576 111 2e-19 seq3431 84.2 3e-11 >seq11038 Length=78219 Score = 637 bits (706), Expect = 6e-178 Identities = 1337/1981 (67%), Gaps = 35/1981 (2%) Strand=Plus/Plus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 ||| ||||||||| | || || ||| ||||||| ||||| || ||||| | | Sbjct 22133 CTGTATGGATCCATTTTGAGCAATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 22192 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 || || | | | || ||||| || || || | ||||| |||||||| | ||||| Sbjct 22193 TTCAGTGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCT 22252 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 22253 ACGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGC 22312 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || || ||||| || |||| ||| | ||| ||||| | ||||| | | || Sbjct 22313 TGTGGAGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAAT 22372 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | ||| || || | || || Sbjct 22373 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATA 22432 Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 || ||||| || |||| | || ||| ||||| || || || || || || || Sbjct 22433 CTGCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTC 22492 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 || | || || || ||||| | ||| | || || ||||| || ||||||| |||| Sbjct 22493 TGCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATT 22552 Query 65507 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 65566 || || ||||| |||| |||||||||||| | ||| || || || ||||| | Sbjct 22553 CAGCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAG 22612 Query 65567 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 65626 || || |||||||| ||||| || || || | ||| || || | || ||||| |||| Sbjct 22613 ACCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC 22672 Query 65627 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA- 65682 || || || ||||| || || || || ||||| ||||| ||||||||||| |||| Sbjct 22673 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGA 22732 Query 65683 --CATCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGC 65737 || ||| ||||| | ||||| || || | ||| ||||||| | || Sbjct 22733 GGCAAGCTT---TTTGA---AGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGC 22786 Query 65738 AACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCA 65795 || || |||| ||||| ||||| || |||| | || | | ||| | | |||||| Sbjct 22787 AATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTT--GTATACTCCACAATCTCA 22844 Query 65796 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 65855 ||||| | ||||| || |||||||| || ||||| || || |||||||| ||||||| Sbjct 22845 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 22904 Query 65856 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 65915 ||||| || || | ||| | || || || ||||| ||||||| || || || || | | Sbjct 22905 GCATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATAC 22964 Query 65916 CAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTA 65972 || | | || ||||||| | | || ||| || ||| ||| |||||| Sbjct 22965 CACAACTGCT-GAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATTGAGTGTA 23023 Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 | || || ||||| || |||||| | ||||| ||||| || ||| || ||| Sbjct 23024 GAGCTTC--TCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCAC 23081 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 66092 |||| ||||| || || | | ||| | ||||| || |||||||| ||||| || Sbjct 23082 ATCAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGG 23141 Query 66093 GCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 66151 || ||| || | |||| | || || ||||| || || || ||||| || || || || Sbjct 23142 GC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAG 23200 Query 66152 GAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 ||| | | | |||| | ||||| || |||| ||||||||| | | | || || ||||| Sbjct 23201 GAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTT 23260 Query 66212 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 66271 || || || || || | ||| | |||||||| || || ||||||| ||| || | || Sbjct 23261 ATTGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAG 23320 Query 66272 ACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAAT 66331 ||||| || ||||||| || || | || || || || ||| | |||| |||| Sbjct 23321 GCCATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAAC 23380 Query 66332 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 66391 || || ||| || || ||||| ||||||||| | || ||| |||| | |||||||| Sbjct 23381 TGCTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATA 23440 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 ||||| || || || |||||| ||||| || || || ||||| || | ||| | | Sbjct 23441 AATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCT 23500 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 66511 | | || || || || || | || ||||| || || || ||||| || ||||| || || Sbjct 23501 ATTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAG 23560 Query 66512 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 66571 ||||| |||||||| |||| |||||||| | || ||||| || || || | ||| Sbjct 23561 GTTGTAGGTCTCAATGGCTGCATCTATATCAGTGTTGTGGATTCCAACAGCTACTCTCAT 23620 Query 66572 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 66631 | ||||||||| || | ||| | | || || ||||||| || |||||| || Sbjct 23621 GAGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTC 23680 Query 66632 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 66691 || || ||||| ||||| | ||||| ||||| || | || ||||| ||| | ||||| Sbjct 23681 TAATGTCTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTT 23740 Query 66692 GAGTTTATCCTTATATTTGTTA--ACTACATCCATGGTAATACTTG--AAATAATCGGAG 66747 ||| || || | ||| | || | ||| | ||| |||| | || || || | Sbjct 23741 GAGGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGG 23796 Query 66748 AATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 66807 | || | |||| |||||||||||||| ||| | ||||||||| || ||||| || | Sbjct 23797 AGTGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACATCACTGAACA 23856 Query 66808 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAAT 66867 || || || ||||| || || || || || || || | || || | |||||||||| Sbjct 23857 CCTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATCCGTGCAGCCAGGATGGCATAAT 23916 Query 66868 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 66927 | || || | || || ||||| || || || || || || |||||||| || || | Sbjct 23917 CTGGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACAG 23976 Query 66928 TTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATAT 66987 | || ||||| | || | |||||||| |||||||| | |||| | || || | | Sbjct 23977 TGGTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAA 24036 Query 66988 GATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGA 67047 || | || | |||||||| | || || ||||| ||||||||||||||||||| Sbjct 24037 ACTCTGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGA 24096 Query 67048 C 67048 | Sbjct 24097 C 24097 >seq15624 Length=12484 Score = 116 bits (128), Expect = 5e-21 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 ||||||| || || ||||| || | ||||||||||||| || ||||| || ||| | | Sbjct 11343 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 11402 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGG 65536 |||||||||| || || |||| | || |||| || || || || || || ||||| Sbjct 11403 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCA--CTTTCGAATGG 11460 Query 65537 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 65596 |||| | |||||| || ||||| || | || ||||||||||| || |||||||| || Sbjct 11461 ATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGTCTGTG 11520 Query 65597 TCTCTTATTAGA 65608 | | | ||||| Sbjct 11521 GCGCATGTTAGA 11532 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65781 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 65840 |||| || ||||||||||| || || || | |||||||| |||| ||| || || || Sbjct 11855 TATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAGATTCTGCTGGTTG 11914 Query 65841 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 65900 ||||| | || || ||||| || || || ||| |||| ||||| || || |||| || Sbjct 11915 CTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGTGAC 11974 Query 65901 TCTATAATCGCTTTCCA 65917 || ||||| || | ||| Sbjct 11975 TCAATAATGGCATACCA 11991 >seq19576 Length=429644 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| |||||| | || || || |||||||| || | ||||| Sbjct 417021 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGCCCAGGCATTAGACCCCTCTTTT 416962 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||| | |||| ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 416961 TCAGCCAATAAATGGCGGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 416902 Query 36300 CAATAAGTCTCTCTCC 36315 | | || ||| || || Sbjct 416901 CCACAATTCTTTCACC 416886 >seq3431 Length=351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 ||||||| | ||||| | ||| ||||| || || ||||||||||| ||||| || || | Sbjct 256 CCTCGTCGCGGCTAATAAGTTCATTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 315 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 36275 | ||||| || |||| ||||| |||||||| |||| Sbjct 316 TCAGCCAGAAAATGGCGGCAAAGGATCCAGAGAAGA 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657788904260080