Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11038 679 0.0 seq15624 123 4e-23 seq3431 84.2 3e-11 >seq11038 Length=78219 Score = 679 bits (752), Expect = 0.0 Identities = 1349/1980 (68%), Gaps = 33/1980 (2%) Strand=Plus/Plus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||| ||||||||| | || || ||| ||||||| ||||| || ||||| | | Sbjct 22133 CTGTATGGATCCATTTTGAGCAATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 22192 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 || || | | | || ||||| || || || | ||||| |||||||| | ||||| Sbjct 22193 TTCAGTGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCT 22252 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | ||| | || ||||| || || | ||||| || Sbjct 22253 ACGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGC 22312 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || || || ||||| || |||| ||| | ||| ||||| | ||||| | || Sbjct 22313 TGTGGAGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAAT 22372 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 || || || || || |||| | ||||| || |||| || || | ||| | |||| Sbjct 22373 CTTCTCCTTAAGCAGCTTCC-AGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCAT 22431 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 | || ||||| || |||| | || |||| |||||| |||||||| || || |||| Sbjct 22432 ACTGCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTT 22491 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 | || || || || || ||||| | || | || || ||||| || || |||| ||| Sbjct 22492 CTGCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATAT 22551 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 | || || ||||| |||| |||||||||||| | ||| || || || ||||| | Sbjct 22552 TCAGCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAA 22611 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 || || |||||||| ||||| || || || | ||| || ||| | || ||||| |||| Sbjct 22612 GACCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAA 22671 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTT---GACCA 79561 || || || ||||| || || || || ||||| || || || |||||||| |||| Sbjct 22672 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCG 22731 Query 79562 ---CATCCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACG 79615 || |||| |||| | ||||| ||| | | ||| ||||||| | | Sbjct 22732 AGGCAAGCTTT---TTGA---AGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAG 22785 Query 79616 CGACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATTTC 79673 | | || |||| ||||| ||||| || |||| | || | | ||| | | || || Sbjct 22786 CAATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTT--GTATACTCCACAATCTC 22843 Query 79674 AGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 79733 |||||| | |||||| || || ||||| || ||||| || || |||||||| ||||||| Sbjct 22844 AGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACA 22903 Query 79734 CGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 79793 ||||| || || | ||| | || || || ||||| ||||||| || || || || | Sbjct 22904 GGCATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATA 22963 Query 79794 CCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTAT 79852 ||| | | || ||||||| | | ||| ||| || ||| ||||| || | Sbjct 22964 CCACAACTGCT-GAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATTGAGTGT 23022 Query 79853 ATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACA 79912 | | || ||||| || |||||| || || || ||||| || || || |||| Sbjct 23023 AGAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACA 23082 Query 79913 TCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 79972 ||| ||||| || | | | || | ||||| || |||||||| ||||| || | Sbjct 23083 TCAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGG 23142 Query 79973 CTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 | ||| || || |||| | || |||||||| || || || ||||| || || || ||| Sbjct 23143 C-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGG 23201 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTG 80091 || | | | |||| | ||||| || |||| ||||||||| | | | ||||||||||| Sbjct 23202 AAGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTA 23261 Query 80092 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 80151 || || || || || | ||| | |||||||| || || ||||||| ||| || | || Sbjct 23262 TTGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGG 23321 Query 80152 CCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATT 80211 ||||| || ||||||| || || | || || || || | | | |||| |||| | Sbjct 23322 CCATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAACT 23381 Query 80212 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 80271 | || ||| || || ||||| ||||||||| | || ||| |||| | |||||||| Sbjct 23382 GCTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAA 23441 Query 80272 ATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 80331 ||||| || ||||| ||||| ||||| || || || ||||| || | ||| | | | Sbjct 23442 ATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTA 23501 Query 80332 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 80391 | || || || || || | || ||||| || || || ||||| || |||||||| || Sbjct 23502 TTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGG 23561 Query 80392 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATT 80451 ||||| |||||||| |||| |||||||| | || ||||| || || || | ||| Sbjct 23562 TTGTAGGTCTCAATGGCTGCATCTATATCAGTGTTGTGGATTCCAACAGCTACTCTCATG 23621 Query 80452 AACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCC 80511 | ||||||||| || | ||| | | || ||| ||||||| || ||| || || Sbjct 23622 AGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTCT 23681 Query 80512 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTG 80571 || || ||||| ||||| | ||||| ||||| || | || ||||| ||| | |||||| Sbjct 23682 AATGTCTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTG 23741 Query 80572 AGTTTATCCTTATATTTGTTA--ACTACATCCATGGTGATACTT--GAAATAATCGGAGA 80627 || || | | |||| | || | ||| | ||| ||| || || || || || Sbjct 23742 AGGCGGTC--TTTGTTTGCAAGGACAATATCTAGGGT--CTCTTGGGAGATCATGGGGGA 23797 Query 80628 ATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAG 80687 || | |||| |||||| ||||||| ||| | ||||||||| || ||||| || | Sbjct 23798 GTGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACATCACTGAACAC 23857 Query 80688 tttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATC 80747 || || || || || || || || || || || || | || || | ||||||||||| Sbjct 23858 CTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATCCGTGCAGCCAGGATGGCATAATC 23917 Query 80748 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGT 80807 ||| || | || || ||||| || || || || || || |||||||| || || || Sbjct 23918 TGGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACAGT 23977 Query 80808 TGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATG 80867 || ||||| | || | |||||||| |||||||| | |||| | || || | | Sbjct 23978 GGTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAA 24037 Query 80868 ATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 || | || | |||||||| | || || ||||| |||||||||||||||||||| Sbjct 24038 CTCTGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 24097 >seq15624 Length=12484 Score = 123 bits (136), Expect = 4e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 ||||||||||||||||| || | | |||| |||||| || ||||| || || | ||| Sbjct 11345 TATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCATAA 11404 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 |||||||| || ||||||| | ||||||| || || | | || || ||||||||| Sbjct 11405 TAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCACTTTCGAATGGATAA 11464 Query 79420 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 79479 | |||||| || ||||| || | || ||||||||||| || |||||||| || | | Sbjct 11465 CGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGTCTGTGGCGC 11524 Query 79480 TTATTAGA 79487 | ||||| Sbjct 11525 ATGTTAGA 11532 >seq3431 Length=351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 ||||||| | ||||| ||||| ||||| || || ||||||||||| ||||| || || | Sbjct 256 CCTCGTCGCGGCTAATAAGTTCATTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 315 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGA 50077 | ||||| || |||| ||||| || ||||| |||| Sbjct 316 TCAGCCAGAAAATGGCGGCAAAGGATCCAGAGAAGA 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717849851765680