Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11038 652 0.0 seq15624 125 1e-23 >seq11038 Length=78219 Score = 652 bits (722), Expect = 0.0 Identities = 1361/2014 (68%), Gaps = 38/2014 (2%) Strand=Plus/Plus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||| ||||||||| | ||||| ||| |||| || ||||| || ||||| | | Sbjct 22133 CTGTATGGATCCATTTTGAGCAATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 22192 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 || || | | | || ||||| || || || | ||||| |||||||| | ||||| Sbjct 22193 TTCAGTGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCT 22252 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 ||| ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 22253 ACGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGC 22312 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| ||| ||||| ||||| | ||| ||| || Sbjct 22313 TGTGGAGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAAT 22372 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | ||| || || | || || Sbjct 22373 CTTCTCCTTAAGCAGCTTCC-AGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCAT 22431 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| |||| | || |||| ||||| || || || || ||||||| Sbjct 22432 ACTGCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTT 22491 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 | || | || || || ||||| | || |||| || ||||| || || |||| ||| Sbjct 22492 CTGCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATAT 22551 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | || || ||||| ||||| |||||||||||| | ||| || || || ||||| | Sbjct 22552 TCAGCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAA 22611 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 || || || ||||| ||||| || ||||| | ||| || ||| | || ||||| |||| Sbjct 22612 GACCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAA 22671 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTT---GACCA 71644 || || || ||||| || || || || ||||| ||||| || |||||||| |||| Sbjct 22672 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCG 22731 Query 71645 ---CATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGG 71698 || |||| |||| | ||||| | | || | ||| ||| ||| | | Sbjct 22732 AGGCAAGCTTT---TTGA---AGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAG 22785 Query 71699 CAACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCGGCATATTGTATAATTTC 71756 ||| || |||| ||||| ||||| || |||| | || | | ||| | | ||| || Sbjct 22786 CAATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTT--GTATACTCCACAATCTC 22843 Query 71757 AGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 71816 |||||| | ||||| || |||||||| || ||||| || || |||||||| ||||||| Sbjct 22844 AGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACA 22903 Query 71817 CGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 71876 ||||| || || | || | || || || ||||| ||||||| || || || || | Sbjct 22904 GGCATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATA 22963 Query 71877 CCAGA-CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTAT 71935 ||| | | || ||||||| | | ||| ||| || ||| ||||| || | Sbjct 22964 CCACAACTGCT-GAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATTGAGTGT 23022 Query 71936 ATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACA 71995 | | || ||||| || |||||| | || || ||||| || ||| | || |||| Sbjct 23023 AGAGCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACA 23082 Query 71996 TCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 72055 ||| ||||| || | | | || | ||||| || |||||||| ||||| || | Sbjct 23083 TCAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGG 23142 Query 72056 CTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 | ||| || || |||| | || |||||||| || || || ||||| || || || ||| Sbjct 23143 C-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGG 23201 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTG 72174 || | | | |||| | ||||| || |||| ||||||||| | | | ||||| ||||| Sbjct 23202 AAGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTA 23261 Query 72175 TTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 72234 || || || || || | ||| | |||||||| || || ||||||| ||| || | || Sbjct 23262 TTGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGG 23321 Query 72235 CCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATT 72294 ||||| || |||||| || || | || || || || | | | |||| ||||| | Sbjct 23322 CCATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAACT 23381 Query 72295 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAG 72354 | || ||| || || ||||| ||||||||| | || ||| |||| | |||||||| Sbjct 23382 GCTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAA 23441 Query 72355 ATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 72414 ||||| || || || |||||| ||||| || || || ||||| || | ||| | | | Sbjct 23442 ATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTA 23501 Query 72415 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGA 72474 | || || || || || | || ||||| || || || ||||| || |||||||| || Sbjct 23502 TTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGG 23561 Query 72475 TTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGT--ATTCCTACCGCGACACGCA 72532 ||||| |||||||| |||| |||||||| | || ||| ||||| || || || | || Sbjct 23562 TTGTAGGTCTCAATGGCTGCATCTATATC--AGTGTTGTGGATTCCAACAGCTACTCTCA 23619 Query 72533 TTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTT 72592 | | ||| ||||| || | ||| | | || ||| ||||||| || |||||| | Sbjct 23620 TGAGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCT 23679 Query 72593 CCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAAT 72652 | || || ||||| ||||| | ||||| ||||| || | || ||||| ||| | || | Sbjct 23680 CTAATGTCTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGT 23739 Query 72653 TGAGTTTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTTG--AAATAATCGGA 72708 |||| || || | ||| | || ||||| | ||| |||| | || || || Sbjct 23740 TGAGGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGG 23795 Query 72709 GAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 72768 || || | |||| |||||| ||||||| ||| | ||||||||| || ||||| || Sbjct 23796 GAGTGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACATCACTGAAC 23855 Query 72769 AGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAA 72828 | || || || || || || || || || || || || | || || || ||||||||| Sbjct 23856 ACCTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATCCGTGCAGCCAGGATGGCATAA 23915 Query 72829 TCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACC 72888 ||||| || | || || ||||| || || ||||| || || |||||||| || || Sbjct 23916 TCTGGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACA 23975 Query 72889 GTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATA 72948 || || ||||| | || | |||||||| |||||||| | |||| | || || | | Sbjct 23976 GTGGTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACA 24035 Query 72949 TGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATA 73008 || | || | |||||||| | || || ||||| ||||||||||||||||| Sbjct 24036 AACTCTGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATG 24095 Query 73009 ACATTTTCCCGGCATCCATTTCGTTTAACGACAA 73042 || ||| ||| ||||| | | |||||||| Sbjct 24096 ACGCGCTCCTGGCGTCCATCT-GAAAAACGACAA 24128 >seq15624 Length=12484 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || || |||||||| || || ||||| |||| | ||||||||||| || ||||| || Sbjct 11336 GAGCCAGCATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAA 11395 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 || ||||||||||||| || ||||||| | ||||||| || || | || || Sbjct 11396 GCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCACTTTCG 11455 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 ||||||||| | |||||| || ||||| || | || ||||| ||||| || |||||| Sbjct 11456 AATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGT 11515 Query 71554 CTGTGTCTCTTATTAGA 71570 ||||| | | | ||||| Sbjct 11516 CTGTGGCGCATGTTAGA 11532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670747741283120