Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11038 140 5e-28 >seq11038 Length=78219 Score = 140 bits (154), Expect = 5e-28 Identities = 349/525 (66%), Gaps = 24/525 (5%) Strand=Plus/Minus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 |||||| || ||| | | |||||| ||||| ||||| ||| ||||||| | |||| Sbjct 23342 AACAAATGGTAACTCAAATGGCCTTGTGCCGATGCTGAGAGTGTACAACAACACCGCACG 23283 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| || || ||||||||||| || || ||| | ||| | ||| |||| || || Sbjct 23282 CTACGTGGACCAAGGTGGCAATAAACGACCGGGTGCTTTTGCCATATACCTGGAGCCATG 23223 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC- 96984 |||| || || |||||||| | ||| || || ||| |||| | |||||| | Sbjct 23222 GCACTTTGATGTGTTTGACTTCCTTGAGCTGAAGAAGAACACTGG---TAAAGAGGAGCA 23166 Query 96985 --GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT--- 97039 | || | ||| | || ||||| || ||| | || ||| ||||||||||| | || Sbjct 23165 GAGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTGATCTGTTCATGAAGAGGGTGGA 23106 Query 97040 CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099 ||| || | ||||| || ||||||||| || || || || || || Sbjct 23105 AAACAACCAGG---ACTGGTCTCTGATGTGCCCCAGTGAGTGCCCTGGGTTGGATGAGTG 23049 Query 97100 CTGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGT 97156 ||||| || ||||||||| ||| ||||| || || || ||||| || || Sbjct 23048 TTGGGGGGAGGAGTTTGAG---AAGCTCTACACTCAATATGAACAGGAGGGTAGA---GT 22995 Query 97157 GAGACG---AGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGAC 97213 || || ||| | || | | ||||| | |||||| | | ||||| ||| || Sbjct 22994 GAAGCGGGTGGTCAAGGCTCAGCAGTTGTGGTATGCCATCATCGAGTCTCAGACAGAAAC 22935 Query 97214 TGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTT 97273 ||||| || ||||| | ||||| ||| || || | || || ||||| | | || Sbjct 22934 AGGAACACCTTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAACCAGCAGAATTT 22875 Query 97274 GGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 |||||||||||| || || ||||||| || ||||| ||||| Sbjct 22874 GGGCACCATCAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTA 22830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740626958695120