Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq27510 93.3 3e-14 >seq27510 Length=34911 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| | | || || || |||||||| || || || |||||||| || Sbjct 29908 CCTCCTCTCAAACGCAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 29967 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | || || |||||| | |||| | || ||||| || Sbjct 29968 AGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGG 30027 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || |||||||| || ||||| ||| ||| | || ||||| || ||| ||| || Sbjct 30028 ATACCCTCTTTGTCCTGGATCTTTGC-CTTGACATTCTCAATGGTGTCACTAGGTTCCAC 30086 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || ||||| || || |||||||||||||| Sbjct 30087 TTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATTTGCAT 30134 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| | || || || || |||||||| || || || |||||||| || Sbjct 30136 CCTCCTCTCAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 30195 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||||| ||| || ||||| | |||| | || ||||| || Sbjct 30196 AGAGTGCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 30255 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || ||| ||| || |||| || || || || || || Sbjct 30256 ATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACT 30315 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||||||||||| ||||| || || ||||| || ||||| || Sbjct 30316 TCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 30365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361973231178942