Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq27510 161 2e-34 seq44130 143 6e-29 seq44590 104 5e-17 seq34043 91.5 3e-13 >seq27510 Length=34911 Score = 161 bits (178), Expect = 2e-34 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | || | || || || ||||| || || |||||| Sbjct 30133 ATCCCTCCTCTCAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 30192 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||||||||| || ||||||||||| |||||||| || |||||| Sbjct 30193 GAGAGAGTGCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGA 30252 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || || ||||| | || || || || || Sbjct 30253 GGGATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCA 30312 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || | || || || |||||||| || || || ||||| |||||||||||| Sbjct 30313 ACTTCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTTG 30366 >seq44130 Length=14217 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104367 ATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAA 104426 |||||||||| || || ||||| || || || | || ||||| || || || ||| ||| Sbjct 11867 ATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCAACAA 11926 Query 104427 AAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACAT 104486 | || |||||||| ||||| || || || ||||| || ||||||||||| ||| | |||| Sbjct 11927 AGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTGGCTATAACAT 11986 Query 104487 TTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTA 104546 |||| | | ||||| |||| |||| || || || ||||| ||||| || ||||| | Sbjct 11987 TTTCAGTGATGTCGCTGGGTTTGACCTGCAGAGTGATGGTCTTCCCAGTGAGGGTTTTCA 12046 Query 104547 CAAATATCTGCATTTTG 104563 |||| ||||| || ||| Sbjct 12047 CAAAAATCTGTATGTTG 12063 >seq44590 Length=141216 Score = 104 bits (114), Expect = 5e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | |||||||||| || |||||||| || || | || ||||| || || Sbjct 1341 TGGTGGTACTTTGTCTCTAAAGGCATTGAATACCTGGACACAGTGTTTTTCATTCTGAGA 1282 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 || || || || ||| ||| ||| | ||||| || || || | || ||||| ||| || Sbjct 1281 AAAAAGTTCAACCAAGTTACTTTCTTGCATGTGTACCACCACTGCACCATGTTCACTCTG 1222 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || || |||||| | ||||||||||| Sbjct 1221 TGGTGGATCGGCATCAAATGGGTAGCAGGAGGACA 1187 >seq34043 Length=9316 Score = 91.5 bits (100), Expect = 3e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| || || ||||||||| | || | || || ||| | || ||||| | | Sbjct 8428 TGGTGGTACTACATTTCTAAAGGAGTGGAGTTTCTGGACACTGTATTTTTCATTTTGAGG 8369 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 || || || || ||| | || ||||||||||| || ||||| | || ||||| | ||| Sbjct 8368 AAAAAGTTCAACCAAGTAAGCTTTCTACATGTCTACCATCACTGCACCATGTTCATCTTG 8309 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || || |||||| || | |||||||| Sbjct 8308 TGGTGGATTGGCATCAAATGGGTCCCCGGAGGACA 8274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150710028550696