Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq38854 123 4e-23 seq7084 111 2e-19 seq14925 91.5 2e-13 >seq38854 Length=59830 Score = 123 bits (136), Expect = 4e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 8705 ACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCT 8764 |||||| | || ||||| ||| | | || | |||| ||| | || ||||| | Sbjct 59644 ACGTTGTTGCACACTAGCTTCTGCAGCGAGGCCGTGTTGATGATGTCGAAGCCCACCTGG 59585 Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || ||||| ||||| || ||||| || | |||||||||||| |||| ||||||||||| Sbjct 59584 CCTCCGAAAGTGCTTGGCTTCCAATATTCAGGGGAGCAGATGGCGTTTCCCATGAGGCCT 59525 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || || || |||| || | ||| |||| ||||| ||||| | | | | Sbjct 59524 TTGAGGGAGAAGGGGGCGCCCATTTCAACCATGGTCTCCCCGAAAATGGCATCCTGTCTG 59465 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTA 8937 ||||| || |||| | || | ||||| |||||| || || | || ||| || Sbjct 59464 GGCTTCTCGACCAGCAGACCCGGGTACAGCTCCACGGCGTCCACGTGTCCATA 59412 Score = 98.7 bits (108), Expect = 1e-15 Identities = 131/181 (72%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 9671 CTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCA 9730 ||| ||| || ||||| || || | |||||| || | |||||||| ||||||||||||| Sbjct 56599 CTCCTTT-AGCACATCACATACGCGGTTGTGCTCACGCAGCCAGATCGTAGCGTACATCA 56541 Query 9731 TGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCA 9790 |||| ||||| ||||||||||| || || ||||| || || | ||| || || | Sbjct 56540 TGAGTCCAGGGACCAGGCCAAAGGCTTCGTGACCCACTGCAAACCGCTGGGACTCTGGGA 56481 Query 9791 CTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCAC 9850 | | || || ||| ||||| ||| || || || || | |||||||||| |||| Sbjct 56480 CGTGAGGGGGGTAGTGCATGTCCACACCAACCTCCTTCACTGTCGGGGGATACACCTCAC 56421 Query 9851 C 9851 | Sbjct 56420 C 56420 >seq7084 Length=102118 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 ||||||||| ||| || ||| ||||| || | ||||||||| ||||||| | Sbjct 52284 ACGGACACCATTTTGAATTTTGACACACTAGTTTTTGCAGAGTTGCACTTTTGACGACCT 52343 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 ||| || ||||| || || || ||||| |||||||| |||||||||||| | | Sbjct 52344 GAAAGCCTGTCTCTCCTCCAAATGTACTGGGCTTCCAGTACTCCGGGGAGCAGAGGGGAT 52403 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| | ||||| || ||||| ||||| |||| ||| | || ||||| || |||| Sbjct 52404 TTCCCAGCAAACCTTTTAGAGAAAAAGGAGCGCCCATCTCCACCATACTCTCCCCAAAGA 52463 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| || || | || |||| || | || | || ||||||| ||| || || | Sbjct 52464 TGGCTCCTGGCCGCGTTTTCTCCAGCATCACACCTGAATAAAACTCCAGAGCGTCTATAT 52523 Query 8931 CTCCGTAAAGGGCC 8944 | || |||||| || Sbjct 52524 CCCCATAAAGGTCC 52537 >seq14925 Length=171059 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 |||||| || || || |||| || || | || || || ||||| ||||||||||| Sbjct 58518 GTTGCAGAATTCACTATGTCAAATCCAACTTTGCCTCCAAATGTGCTTGGTTTCCAGTAC 58577 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 || || || ||| |||| ||| || ||||| |||||||| |||||||||| ||| Sbjct 58578 ATGGGAGAACATATGGGGTTCCCCAATAGTCCTTTCAGGGAAAAGGGAGCCCCCATCTCC 58637 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | |||||||| || || || || ||||| | || |||| ||||| || | || Sbjct 58638 ACCATGCTCTCTCCAAATATTGCTCCTGGACGCGTTTTCTCCAACAAGAGACCAGGATAA 58697 Query 8912 AACTCCACAGCCTCGATGTCTCC 8934 || || | ||| | ||||| || Sbjct 58698 AATTCAAGAGCATTTATGTCACC 58720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708111535197280