Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq45291 172 9e-39 seq11083 168 1e-37 seq31010 165 1e-36 seq34580 154 2e-33 seq24136 154 2e-33 seq13138 150 3e-32 seq964 143 4e-30 seq10525 136 6e-28 seq28053 132 8e-27 seq11233 105 1e-18 >seq45291 Length=9472 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| || ||||| ||||| ||||| Sbjct 857 CGCTAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGCATCACTAAGCCCGCTAT 916 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || |||||| |||| || || |||| || |||| Sbjct 917 CCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 976 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | ||| | |||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 977 TCGCGGTGTGCTCAAGGTTTTCCTCGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 1036 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 1037 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGACAGGG 1096 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || |||||| | ||| Sbjct 1097 CCGCACTCTGTACGGCTTTGGAGGCTAA 1124 >seq11083 Length=6744 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| || ||||||||||| ||||| Sbjct 6046 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCCGCTAT 5987 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || |||||| ||||||| || |||| || |||| Sbjct 5986 CCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 5927 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | || || ||| ||| |||| ||| || || ||| || || Sbjct 5926 CCGCGGTGTTCTCAAGGTTTTTCTGGAGAACGTGATCCGTGACGCCGTCACCTACACTGA 5867 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| ||| |||||||| | || || || |||| | || || Sbjct 5866 ACACGCCAAGAGGAAGACTGTGACCGCCATGGATGTGGTGTACGCTCTGAAGAGACAGGG 5807 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| ||| ||||| Sbjct 5806 ACGCACTCTGTACGGTTTCGGAGGTTAA 5779 >seq31010 Length=2226 Score = 165 bits (182), Expect = 1e-36 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | || || ||||||||||| || ||||| ||||| ||||| Sbjct 895 CGCCAAGCGTCACCGTAAAGTGCTCCGTGATAACATCCAGGGCATCACTAAGCCCGCTAT 836 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || |||||| |||| || || |||| || |||| Sbjct 835 CCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 776 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || | |||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 775 TCGCGGTGTGCTCAAAGTTTTCCTCGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 716 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 715 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGACAGGG 656 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 ||| | | || || || ||| ||||| || Sbjct 655 CCGCACTCTGTACGGCTTCGGAGGTTAAGCT 625 >seq34580 Length=576 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| || ||||||||||| ||||| Sbjct 469 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGCCCGCTAT 410 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || |||||| |||| || || |||| || |||| Sbjct 409 CCGCCGTCTGGCTCGCCGCGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 350 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | ||||| ||| ||| |||| ||| || || || ||||| Sbjct 349 CCGCGGAGTGCTCAAAGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACGTACACCGA 290 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 289 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 230 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 229 CCGCACTCTGTACGGCTTCGGAGGTTAA 202 >seq24136 Length=5854 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 4279 CGCCAAGCGTCACCGTAAAGTTCTTCGTGATAACATCCAGGGCATCACTAAGCCCGCTAT 4220 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || |||||| | || || || |||| || |||| Sbjct 4219 CCGCCGTCTGGCTCGCCGCGGCGGTGTGAAGCGTATTTCCGGTCTGATCTACGAGGAGAC 4160 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||||| ||| ||| |||| ||| || || ||| || || Sbjct 4159 TCGCGGAGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACTGA 4100 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | || || || |||| | || || Sbjct 4099 GCACGCAAAGAGAAAGACCGTGACTGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 4040 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| ||| ||||| Sbjct 4039 CCGCACTCTGTACGGTTTCGGAGGTTAA 4012 >seq13138 Length=12877 Score = 150 bits (166), Expect = 3e-32 Identities = 193/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| || ||||||||||| || || Sbjct 2705 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGTATCACCAAGCCCGCCAT 2646 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || |||||| |||| || ||| |||| || |||| Sbjct 2645 CCGCCGTCTGGCTCGCCGCGGCGGTGTGAAGCGTATCTCCGGTTTGATCTACGAGGAGAC 2586 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | || | ||||| ||| ||| |||| ||| || || || ||||| Sbjct 2585 CCGCGGAGTGCTCAAAGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACGTACACCGA 2526 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 2525 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 2466 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTT 16697 ||| | | || ||||| ||| ||| Sbjct 2465 CCGCACTCTGTACGGTTTCGGAGGTT 2440 >seq964 Length=223 Score = 143 bits (158), Expect = 4e-30 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 16436 AAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGT 16495 |||||||| || | | ||| || || || |||||||| ||||| ||||| || |||||| Sbjct 2 AAGCGTCACCGTAAAGTTCTCCGTGACAATATCCAAGGCATCACTAAGCCGGCCATCCGT 61 Query 16496 CGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGT 16555 || ||||| |||||||| ||||| ||||| |||| || | ||||||| |||| |||| Sbjct 62 CGCCTGGCGCGTCGTGGCGGAGTAAAGCGCATCTCCGGTCTCATCTATGAGGAGACTCGT 121 Query 16556 GATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCAC 16615 | || | ||| | ||||| ||| ||| |||| || || || || ||||||||| Sbjct 122 GGCGTGCTTAAGGTTTTCCTGGAGAACGTGATCCGCGACGCCGTCACTTACACCGAGCAC 181 Query 16616 GCTAAACGTAAGACTGTCACCTCCATGGA 16644 || || | |||||||| ||| ||||||| Sbjct 182 GCAAAGAGGAAGACTGTGACCGCCATGGA 210 >seq10525 Length=65857 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | |||||| ||||||||||| || || || || || ||||| Sbjct 3072 CGCCAAGCGTCACCGTAAAGTTCTTCGTGATAACATCCAGGGTATTACTAAACCCGCTAT 3013 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | |||||||||| || ||||| || |||||| |||| || || |||| || |||| Sbjct 3012 CGCCGGTCTGGCTCGCCGCGGTGGCGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 2953 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||||| ||| ||| |||| ||| || || ||| || || Sbjct 2952 TCGCGGAGTGCTCAAGGTTTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACTGA 2893 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | || || || |||| | || || Sbjct 2892 GCACGCAAAGAGAAAGACCGTGACTGCCATGGACGTGGTGTACGCCCTGAAGAGACAGGG 2833 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 2832 CCGCACTCTGTACGGCTTCGGAGGTTAA 2805 >seq28053 Length=77842 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||| |||||||| |||||||| || || || Sbjct 69982 CGCCAAGCGTCACCGTAAAGTTCTCCGCGATAATATCCAAGGCATCACCAAACCCGCCAT 69923 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | ||||| || || ||||| || |||||| |||| || || |||| || |||| Sbjct 69922 CCGCAGACTGGCGCGCCGCGGTGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 69863 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | ||||| ||| ||| |||| || || || || ||||| Sbjct 69862 TCGTGGAGTGCTTAAGGTTTTCCTTGAGAACGTGATCCGCGACGCAGTCACTTACACCGA 69803 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| | |||||| | || || || | || | || || Sbjct 69802 GCACGCCAAGAGGAAGACCGTGACCGCTATGGATGTAGTGTACGCGCTTAAGAGGCAGGG 69743 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 69742 TCGCACTCTGTACGGCTTCGGAGGTTAA 69715 >seq11233 Length=37889 Score = 105 bits (116), Expect = 1e-18 Identities = 169/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||| ||| || | | ||| || ||||||||||| || ||||||||| | |||| Sbjct 1153 CGCCAAGCATCACCGTAAAGTTCTCCGTGATAACATCCAGGGCATCACCAAGACCACTAT 1212 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | |||||||||| | || || |||||| |||| | || ||| || |||| Sbjct 1213 CTACCGTCTGGCTCACCACGGCAATGTGAAGCGTATCTCCAGTCTGACCTACGAGGAGAC 1272 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | ||| | ||| | ||| ||| |||| ||| || ||| ||| || || Sbjct 1273 TCGTGGAGTGCTCAAGGTTTTCTTGGAGAACGTGATCCGTGACGCCTTCACCTACACTGA 1332 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| || || ||||||| || || || || ||||| || || Sbjct 1333 GCATGCAAAGAGAAAGACCGTAACTGCCATGGACATAGTGTACGCCCTGAAAAAACAGGG 1392 Query 16672 CCG 16674 ||| Sbjct 1393 CCG 1395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79032536606766