Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq11038 616 2e-171 seq15624 120 4e-22 seq3431 84.2 3e-11 seq19576 82.4 1e-10 >seq11038 Length=78219 Score = 616 bits (682), Expect = 2e-171 Identities = 1332/1981 (67%), Gaps = 35/1981 (2%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| ||||||||| | || || ||| ||||||| ||||| || ||||| | | Sbjct 22133 CTGTATGGATCCATTTTGAGCAATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 22192 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || || | | | || ||||| || || || | ||||| |||||||| | ||||| Sbjct 22193 TTCAGTGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCT 22252 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 22253 ACGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGC 22312 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || |||| ||| | ||| ||||| | ||||| | | || Sbjct 22313 TGTGGAGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAAT 22372 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || || | || || Sbjct 22373 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATA 22432 Query 62543 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62602 || ||||| || |||| | || ||| ||||| || || || || || || || Sbjct 22433 CTGCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTC 22492 Query 62603 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62662 || | || || || ||||| | ||| | || || ||||| || ||||||| |||| Sbjct 22493 TGCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATT 22552 Query 62663 TAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAA 62722 || || ||||| |||| |||||||||||| | ||| || || || || || | Sbjct 22553 CAGCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAG 22612 Query 62723 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62782 || || |||||||| ||||| || || || | ||| || || | || ||||| |||| Sbjct 22613 ACCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC 22672 Query 62783 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA- 62838 || || || ||||| || || || || ||||| ||||| ||||||||||| |||| Sbjct 22673 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGA 22732 Query 62839 --CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGC 62893 || ||| ||||| | ||||| | || | ||| ||||||| | || Sbjct 22733 GGCAAGCTT---TTTGA---AGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGC 22786 Query 62894 AACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCA 62951 || || |||| ||||| ||||| || |||| | || | | ||| | | |||||| Sbjct 22787 AATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTT--GTATACTCCACAATCTCA 22844 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||||| | ||||| || ||||| || || ||||| || || |||||||| ||||||| Sbjct 22845 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 22904 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 ||||| || || | ||| | || || || ||||| ||||||| || || || || | | Sbjct 22905 GCATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATAC 22964 Query 63072 CAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTAT--AGTGTA 63128 || | | || ||||||| | | || ||| | || ||| ||| |||||| Sbjct 22965 CACAACTGCT-GAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATTGAGTGTA 23023 Query 63129 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 63188 | || || ||||| || |||||| | ||||| ||||| || ||| || ||| Sbjct 23024 GAGCTTC--TCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCAC 23081 Query 63189 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63248 |||| ||||| || || | | ||| | ||||| || |||||||| ||||| || Sbjct 23082 ATCAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGG 23141 Query 63249 GCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || ||| || || |||| | || || ||||| || || || ||||| || || || || Sbjct 23142 GC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAG 23200 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 ||| | | | |||| | ||||| || |||| ||||||||| | | | || || ||||| Sbjct 23201 GAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTT 23260 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 || || || || || | ||| | |||||||| || || ||||||| ||| || | || Sbjct 23261 ATTGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAG 23320 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487 || ||||| ||||||| || || | || || || || | | | |||| |||| Sbjct 23321 GCCATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAAC 23380 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 || || ||| || || ||||| ||||||||| | || ||| |||| | || ||||| Sbjct 23381 TGCTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATA 23440 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 || || || ||||| ||||| ||||| || || || ||||| || | ||| | | Sbjct 23441 AATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCT 23500 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAG 63667 | | || || || || || | || ||||| || || || ||||| || ||||| || || Sbjct 23501 ATTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAG 23560 Query 63668 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63727 ||||| |||||||| |||| |||||||| | || ||||| || || || | ||| Sbjct 23561 GTTGTAGGTCTCAATGGCTGCATCTATATCAGTGTTGTGGATTCCAACAGCTACTCTCAT 23620 Query 63728 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63787 | ||||||||| || | ||| | | || || ||||||| || |||||| || Sbjct 23621 GAGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTC 23680 Query 63788 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63847 || || ||||| ||||| | ||||| ||||| || | || ||||| ||| | ||||| Sbjct 23681 TAATGTCTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTT 23740 Query 63848 GAGTTTATCCTTATATTTGTTA--ACTATATCCATGGTGATACTTG--AAATAATCGGAG 63903 ||| || || | ||| | || ||||| | ||| |||| | || || || | Sbjct 23741 GAGGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGG 23796 Query 63904 AATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 63963 | || | |||| |||||| ||||||| ||| | ||||||||| || ||||| || | Sbjct 23797 AGTGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACATCACTGAACA 23856 Query 63964 GtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAAT 64023 || || || || || || || || || || || || | || || || |||||||||| Sbjct 23857 CCTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATCCGTGCAGCCAGGATGGCATAAT 23916 Query 64024 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 64083 | || || | || || ||||| || || || || || || |||||||| || || | Sbjct 23917 CTGGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACAG 23976 Query 64084 TTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATAT 64143 | || ||||| | || | ||||| || |||||||| | |||| | || || | | Sbjct 23977 TGGTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAA 24036 Query 64144 GATCCGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGA 64203 || | || | |||||||| | || || ||||| ||||||||||||||||||| Sbjct 24037 ACTCTGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGA 24096 Query 64204 C 64204 | Sbjct 24097 C 24097 >seq15624 Length=12484 Score = 120 bits (132), Expect = 4e-22 Identities = 143/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 62575 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62634 ||||||| || || ||||| || | ||||||||||||| || ||||| || ||| | | Sbjct 11343 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 11402 Query 62635 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGC--TTCCAGGCTATCAAATGG 62692 |||||||||| || || |||| | || |||| || || || || || || ||||| Sbjct 11403 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCA--CTTTCGAATGG 11460 Query 62693 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62752 |||| | |||||| || |||||||| | || ||||||||||| || |||||||| || Sbjct 11461 ATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGTCTGTG 11520 Query 62753 TCTCTTATTAGA 62764 | | | ||||| Sbjct 11521 GCGCATGTTAGA 11532 >seq3431 Length=351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||| | ||||| ||||| ||||| || || ||||||||||| ||||| || || | Sbjct 256 CCTCGTCGCGGCTAATAAGTTCATTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 315 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGA 33421 | ||||| || |||| || || |||||||| |||| Sbjct 316 TCAGCCAGAAAATGGCGGCAAAGGATCCAGAGAAGA 351 >seq19576 Length=429644 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 |||||||| || | ||||| ||||| ||||||| ||||| || || || ||||||||| Sbjct 417714 GACATAACACCAAACTTTTGATATTCTGCCACACGCTTTTCAAAGAAGTTGGTTTTTCCT 417655 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 || | ||| || |||||||| ||||||||||| Sbjct 417654 TCTAGTGAGATCGACTCCATGAAGTCAAACGGATT 417620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622583850471920