Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014-
12-02] 46,662 sequences; 679,761,122 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq11038 196 1e-44
seq15624 93.3 1e-13
>seq11038
Length=78219
Score = 196 bits (216), Expect = 1e-44
Identities = 600/916 (66%), Gaps = 20/916 (2%)
Strand=Plus/Minus
Query 363357 TATCAATTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATC 363416
||| | |||||| | |||| | || || | || || | |||||| | ||| ||
Sbjct 23732 TATAATTTATGATAGGGATTTTTCTTACAATTTCTTTGGCTTTAAGACATTAGAGCGCTC 23673
Query 363417 CTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGT 363476
|||||| ||||||||| | | | ||| ||||| ||||| ||| | ||| | ||
Sbjct 23672 CTACCTGCTGAAAATCAATGGTAAAGTGGCTGAGCGCCCACAGCACATGCTCATGAGAGT 23613
Query 363477 TGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAG 363536
||| |||| ||||| | | ||| | ||||| || ||||| || || || || ||
Sbjct 23612 AGCTGTTGGAATCCACAACACTGATATAGATGCAGCCATTGAGACCTACAACCTGCTGTC 23553
Query 363537 TGCTC-GTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCAC 363595
|| ||| ||||| || ||| | || || ||| ||| || || || || || |
Sbjct 23552 TGAGAAGTGG-TTCACTCATGCCTCTCCCACTCTGTTCAACGCAGGCACCAATAGACCCC 23494
Query 363596 AGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA 363655
|| | || ||||| || || |||||||| || ||| || || || | ||| |
Sbjct 23493 AGCTCTCCAGCTGCTTCCTGCTGGCCATGAAGGATGACAGCATTGATGGCATTTATGATA 23434
Query 363656 CACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACA 363715
|||| || | |||||||| || || || |||||| || ||||||||| | | |
Sbjct 23433 CACTCAAACAATGTGCTCTCATCTCTAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCT 23374
Query 363716 ATGTTCGTGCA-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTT 363774
| || | || ||| ||||||||| || ||| || |||| ||||| || ||
Sbjct 23373 GTATTAGATCAACAGGT-AGTTACATTGCTGGAACAAATGGTAACTCAAATGGCCTTGTG 23315
Query 363775 CCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGC 363834
|| ||||| | |||| |||| || || | ||||| ||||| ||||| || ||
Sbjct 23314 CCGATGCTGAGAGTGTACAACAACACCGCACGCTACGTGGACCAAGGTGGCAATAAACGA 23255
Query 363835 AAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAG 363894
|| || ||||| || || || ||||| || ||| | ||||| || ||||||
Sbjct 23254 CCGGGTGCTTTTGCCATATACCTGGAGCCATGGCACTTTGATGTGTTTGACTTCCTTGAG 23195
Query 363895 CTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGG 363954
|| ||| ||||| || |||||||| | | ||||| || || |||||||| || |||
Sbjct 23194 CTGAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGG 23135
Query 363955 GTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCA 364014
| |||| | || |||||| | ||||| || | ||||| || | |||||
Sbjct 23134 ATCCCTGATCTGTTCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTCTGATGTGCCCC 23075
Query 364015 CACGAATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTT--GCTCTATACGAA 364071
|| || || || | || ||| ||||| || || | || |||||| || |
Sbjct 23074 AGTGAGTGCCCTGGGTTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTCTACACTCA 23016
Query 364072 AAGTATGAATCGGAGGGAA-----AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGT 364126
| |||||| |||||| | | || || | ||| || ||| || | ||||
Sbjct 23015 A--TATGAACAGGAGGGTAGAGTGAAGCGGGTG-GTCAAG----GCTCAGCAGTTGTGGT 22963
Query 364127 TTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGT 364186
||||||||| || || |||| || ||||||||||| || ||||||||||||||| | |
Sbjct 22962 ATGCCATCATCGAGTCTCAGACAGAAACAGGAACACCTTACATGTTGTACAAAGATGCCT 22903
Query 364187 GCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCG 364246
| ||| | ||| ||||||||| | | || || || | || ||| | || || |
Sbjct 22902 GTAACAGGAAGAGTAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTGCACTG 22843
Query 364247 AGATTATTGAATACAC 364262
||||| | || || ||
Sbjct 22842 AGATTGTGGAGTATAC 22827
>seq15624
Length=12484
Score = 93.3 bits (102), Expect = 1e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897
||||| ||||| | || |||||||| ||| ||| | |||||||||||||| |
Sbjct 12414 GGGGCATTTGCAGTCTACCTCGAGCCATGGCATTTTGATGTATTTGAGTTTCTTGACTTA 12355
Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957
||||||||| || |||||||| | || ||||||||||||| ||| || ||| |
Sbjct 12354 AAGAAAAACACCGGTAAAGAGGAGCAAAGAGCCCGTGATCTGTTCTTTGCTCTGTGGATC 12295
Query 363958 TCTGACCATTTTATGAAGCGCGTGGA 363983
| || | |||||||||||| |||||
Sbjct 12294 CCAGATCTTTTTATGAAGCGTGTGGA 12269
Score = 84.2 bits (92), Expect = 6e-11
Identities = 124/174 (71%), Gaps = 4/174 (2%)
Strand=Plus/Minus
Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026
|||| || ||||| |||| | |||||||| || |||||||| || | | | ||
Sbjct 10505 TTCCTGATGATCTAAAGCAGCTCTACAAAACTGTTTGGGAAATCTCTCAGAAGATTGTCC 10446
Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC- 365085
|| | ||||||||||| || ||||| | ||| ||||||||||| | ||| ||||
Sbjct 10445 TTAAGATGGCGGCCGACCGTGGTGCATATATTGACCAGAGCCAGTCTCTGAAC--ATTCA 10388
Query 365086 -ATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138
|| || | |||| || | ||| || ||| |||||| ||||| ||||||||
Sbjct 10387 TATTGCTGAACCAAACTATGGCAAACTCACAAGCATGCACTTCTATGGGTGGAA 10334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302574381089684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |