Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq11038 196 1e-44 seq15624 93.3 1e-13 >seq11038 Length=78219 Score = 196 bits (216), Expect = 1e-44 Identities = 600/916 (66%), Gaps = 20/916 (2%) Strand=Plus/Minus Query 363357 TATCAATTATGAGAAGGATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATC 363416 ||| | |||||| | |||| | || || | || || | |||||| | ||| || Sbjct 23732 TATAATTTATGATAGGGATTTTTCTTACAATTTCTTTGGCTTTAAGACATTAGAGCGCTC 23673 Query 363417 CTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGT 363476 |||||| ||||||||| | | | ||| ||||| ||||| ||| | ||| | || Sbjct 23672 CTACCTGCTGAAAATCAATGGTAAAGTGGCTGAGCGCCCACAGCACATGCTCATGAGAGT 23613 Query 363477 TGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAG 363536 ||| |||| ||||| | | ||| | ||||| || ||||| || || || || || Sbjct 23612 AGCTGTTGGAATCCACAACACTGATATAGATGCAGCCATTGAGACCTACAACCTGCTGTC 23553 Query 363537 TGCTC-GTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCAC 363595 || ||| ||||| || ||| | || || ||| ||| || || || || || | Sbjct 23552 TGAGAAGTGG-TTCACTCATGCCTCTCCCACTCTGTTCAACGCAGGCACCAATAGACCCC 23494 Query 363596 AGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACA 363655 || | || ||||| || || |||||||| || ||| || || || | ||| | Sbjct 23493 AGCTCTCCAGCTGCTTCCTGCTGGCCATGAAGGATGACAGCATTGATGGCATTTATGATA 23434 Query 363656 CACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACA 363715 |||| || | |||||||| || || || |||||| || ||||||||| | | | Sbjct 23433 CACTCAAACAATGTGCTCTCATCTCTAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCT 23374 Query 363716 ATGTTCGTGCA-CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTT 363774 | || | || ||| ||||||||| || ||| || |||| ||||| || || Sbjct 23373 GTATTAGATCAACAGGT-AGTTACATTGCTGGAACAAATGGTAACTCAAATGGCCTTGTG 23315 Query 363775 CCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGC 363834 || ||||| | |||| |||| || || | ||||| ||||| ||||| || || Sbjct 23314 CCGATGCTGAGAGTGTACAACAACACCGCACGCTACGTGGACCAAGGTGGCAATAAACGA 23255 Query 363835 AAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAG 363894 || || ||||| || || || ||||| || ||| | ||||| || |||||| Sbjct 23254 CCGGGTGCTTTTGCCATATACCTGGAGCCATGGCACTTTGATGTGTTTGACTTCCTTGAG 23195 Query 363895 CTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGG 363954 || ||| ||||| || |||||||| | | ||||| || || |||||||| || ||| Sbjct 23194 CTGAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGG 23135 Query 363955 GTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCA 364014 | |||| | || |||||| | ||||| || | ||||| || | ||||| Sbjct 23134 ATCCCTGATCTGTTCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTCTGATGTGCCCC 23075 Query 364015 CACGAATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTT--GCTCTATACGAA 364071 || || || || | || ||| ||||| || || | || |||||| || | Sbjct 23074 AGTGAGTGCCCTGGGTTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTCTACACTCA 23016 Query 364072 AAGTATGAATCGGAGGGAA-----AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGT 364126 | |||||| |||||| | | || || | ||| || ||| || | |||| Sbjct 23015 A--TATGAACAGGAGGGTAGAGTGAAGCGGGTG-GTCAAG----GCTCAGCAGTTGTGGT 22963 Query 364127 TTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGT 364186 ||||||||| || || |||| || ||||||||||| || ||||||||||||||| | | Sbjct 22962 ATGCCATCATCGAGTCTCAGACAGAAACAGGAACACCTTACATGTTGTACAAAGATGCCT 22903 Query 364187 GCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCG 364246 | ||| | ||| ||||||||| | | || || || | || ||| | || || | Sbjct 22902 GTAACAGGAAGAGTAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTGCACTG 22843 Query 364247 AGATTATTGAATACAC 364262 ||||| | || || || Sbjct 22842 AGATTGTGGAGTATAC 22827 >seq15624 Length=12484 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 ||||| ||||| | || |||||||| ||| ||| | |||||||||||||| | Sbjct 12414 GGGGCATTTGCAGTCTACCTCGAGCCATGGCATTTTGATGTATTTGAGTTTCTTGACTTA 12355 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||||||||| || |||||||| | || ||||||||||||| ||| || ||| | Sbjct 12354 AAGAAAAACACCGGTAAAGAGGAGCAAAGAGCCCGTGATCTGTTCTTTGCTCTGTGGATC 12295 Query 363958 TCTGACCATTTTATGAAGCGCGTGGA 363983 | || | |||||||||||| ||||| Sbjct 12294 CCAGATCTTTTTATGAAGCGTGTGGA 12269 Score = 84.2 bits (92), Expect = 6e-11 Identities = 124/174 (71%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026 |||| || ||||| |||| | |||||||| || |||||||| || | | | || Sbjct 10505 TTCCTGATGATCTAAAGCAGCTCTACAAAACTGTTTGGGAAATCTCTCAGAAGATTGTCC 10446 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTC- 365085 || | ||||||||||| || ||||| | ||| ||||||||||| | ||| |||| Sbjct 10445 TTAAGATGGCGGCCGACCGTGGTGCATATATTGACCAGAGCCAGTCTCTGAAC--ATTCA 10388 Query 365086 -ATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 || || | |||| || | ||| || ||| |||||| ||||| |||||||| Sbjct 10387 TATTGCTGAACCAAACTATGGCAAACTCACAAGCATGCACTTCTATGGGTGGAA 10334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302574381089684