Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014-
12-02] 46,662 sequences; 679,761,122 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq16290 116 2e-21
seq10304 104 2e-17
seq19805 98.7 7e-16
seq27510 95.1 8e-15
>seq16290
Length=21026
Score = 116 bits (128), Expect = 2e-21
Identities = 129/172 (75%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378
|||| || || | ||| || || ||||| ||||| ||||| ||||| ||| ||||||||
Sbjct 8344 ACCCAACCAAGTTTTTTGGTTGTGAACTGGGCGCGCAGACCCAGTTCGATTCCAAAAACG 8285
Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438
| |||| |||||| ||||| || ||| | | ||||||||||||| | || || || |
Sbjct 8284 ACCGCTACATCGTCAACGGCTCCCATGAGGCCAACAAGCTGCAGGACATGCTCGATGGGT 8225
Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490
| || || || ||||||||||| || ||||| ||||| || || || ||
Sbjct 8224 TCATACGGAAATTTGTGCTGTGCTCCGAGTGCGACAACCCCGAAACTGATCT 8173
>seq10304
Length=25844
Score = 104 bits (114), Expect = 2e-17
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||| || | |||||||||| || ||||| ||
Sbjct 458 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGGCAGTGGGAATCTTGT 517
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||||| |||| || |||||||||||
Sbjct 518 TCATCCATTCATGCGTGTCATTATTTAGATGACGA 552
>seq19805
Length=169703
Score = 98.7 bits (108), Expect = 7e-16
Identities = 68/77 (88%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|| ||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 3706 CTGTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGACTATCGGTCTCGT 3647
Query 20007 GGTAATATTTAGCCTTA 20023
| | ||||||||||||
Sbjct 3646 GCCAGTATTTAGCCTTA 3630
>seq27510
Length=34911
Score = 95.1 bits (104), Expect = 8e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147
|| || ||||||||||||| |||||| || || ||| ||||| ||||| ||||| |||
Sbjct 29905 TTTCCTCCTCTCAAACGCAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCA 29964
Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207
|| | || | || || | || || || || || || || | || || || |
Sbjct 29965 GAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGA 30024
Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267
|||| || ||||||||| || ||| ||| ||||||| | || || | | |||
Sbjct 30025 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGTTCC 30084
Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| || || || || || || |||| ||| ||||| || || |||||
Sbjct 30085 ACTTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATTTGCAT 30134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334756717830122
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |