Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq16290 116 2e-21 seq10304 104 2e-17 seq19805 98.7 7e-16 seq27510 95.1 8e-15 >seq16290 Length=21026 Score = 116 bits (128), Expect = 2e-21 Identities = 129/172 (75%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 |||| || || | ||| || || ||||| ||||| ||||| ||||| ||| |||||||| Sbjct 8344 ACCCAACCAAGTTTTTTGGTTGTGAACTGGGCGCGCAGACCCAGTTCGATTCCAAAAACG 8285 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | |||| |||||| ||||| || ||| | | ||||||||||||| | || || || | Sbjct 8284 ACCGCTACATCGTCAACGGCTCCCATGAGGCCAACAAGCTGCAGGACATGCTCGATGGGT 8225 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || || || ||||||||||| || ||||| ||||| || || || || Sbjct 8224 TCATACGGAAATTTGTGCTGTGCTCCGAGTGCGACAACCCCGAAACTGATCT 8173 >seq10304 Length=25844 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||| || | |||||||||| || ||||| || Sbjct 458 AAGCCCGTTCCCTTGGCTGTGGTTTCGCAAGGTGGTAGATAGGGGCAGTGGGAATCTTGT 517 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| |||| || ||||||||||| Sbjct 518 TCATCCATTCATGCGTGTCATTATTTAGATGACGA 552 >seq19805 Length=169703 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 || ||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 3706 CTGTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACAGTACTTGTTGACTATCGGTCTCGT 3647 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 3646 GCCAGTATTTAGCCTTA 3630 >seq27510 Length=34911 Score = 95.1 bits (104), Expect = 8e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 || || ||||||||||||| |||||| || || ||| ||||| ||||| ||||| ||| Sbjct 29905 TTTCCTCCTCTCAAACGCAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCA 29964 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 || | || | || || | || || || || || || || | || || || | Sbjct 29965 GAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGA 30024 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| || ||||||||| || ||| ||| ||||||| | || || | | ||| Sbjct 30025 GGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGTTCC 30084 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| || || || || || || |||| ||| ||||| || || ||||| Sbjct 30085 ACTTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATTTGCAT 30134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334756717830122