Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq11038 628 3e-175 seq15624 116 5e-21 seq19576 111 2e-19 seq3431 84.2 3e-11 >seq11038 Length=78219 Score = 628 bits (696), Expect = 3e-175 Identities = 1335/1981 (67%), Gaps = 35/1981 (2%) Strand=Plus/Plus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 ||| ||||||||| | || || ||| ||||||| ||||| || ||||| | | Sbjct 22133 CTGTATGGATCCATTTTGAGCAATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCG 22192 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 || || | | | || ||||| || || || | ||||| |||||||| | ||||| Sbjct 22193 TTCAGTGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCT 22252 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| || | ||| | |||||||| || || | ||||| || Sbjct 22253 ACGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGC 22312 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| ||| | ||| ||||| | ||||| | | || Sbjct 22313 TGTGGAGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAAT 22372 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397 || || || || | | ||| | ||| || || | || || Sbjct 22373 CTTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATA 22432 Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457 || ||||| || |||| | || ||| ||||| || || || || || || || Sbjct 22433 CTGCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTC 22492 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 || | || || || ||||| | ||| | || || ||||| || ||||||| |||| Sbjct 22493 TGCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATT 22552 Query 62518 TAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAA 62577 || || ||||| |||| |||||||||||| | ||| || || || ||||| | Sbjct 22553 CAGCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAG 22612 Query 62578 TCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAAT 62637 || || |||||||| ||||| || || || | ||| || || | || ||||| |||| Sbjct 22613 ACCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC 22672 Query 62638 AGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTT---GACCA- 62693 || || || ||||| || || || || ||||| ||||| ||||||||||| |||| Sbjct 22673 TGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGA 22732 Query 62694 --CATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGC 62748 || ||| ||||| | ||||| | || | ||| ||||||| | || Sbjct 22733 GGCAAGCTT---TTTGA---AGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGC 22786 Query 62749 AACAGATGCCAGATTACAAACGGCTACCTCAT--TAGCATCCGCATATTGTATTATCTCA 62806 || || |||| ||||| ||||| || |||| | || | | ||| | | |||||| Sbjct 22787 AATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTT--GTATACTCCACAATCTCA 22844 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||||| | ||||| || |||||||| || ||||| || || |||||||| ||||||| Sbjct 22845 GTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAG 22904 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 ||||| || || | ||| | || || || ||||| ||||||| || || || || | | Sbjct 22905 GCATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATAC 22964 Query 62927 CAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTAT--AGTGTA 62983 || | | || ||||||| | | || ||| || ||| ||| |||||| Sbjct 22965 CACAACTGCT-GAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATTGAGTGTA 23023 Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 | || || ||||| || |||||| | |||| ||||| || ||| || ||| Sbjct 23024 GAGCTTC--TCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCAC 23081 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 63103 |||| ||||| || || | | ||| | ||||| || |||||||| ||||| || Sbjct 23082 ATCAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGG 23141 Query 63104 GCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| || || |||| | || || ||||| || || || ||||| || || || || Sbjct 23142 GC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAG 23200 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 ||| | | | |||| | ||||| || |||| ||||||||| | | | || || ||||| Sbjct 23201 GAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTT 23260 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 || || || || || | ||| | |||||||| || || ||||||| ||| || | || Sbjct 23261 ATTGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAG 23320 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63342 ||||| || ||||||| || || | || || || || | | | |||| |||| Sbjct 23321 GCCATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAAC 23380 Query 63343 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 63402 || || ||| || || ||||| ||||||||| | || ||| |||| | |||||||| Sbjct 23381 TGCTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATA 23440 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462 ||||| || || || |||||| ||||| || || || ||||| || | ||| | | Sbjct 23441 AATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCT 23500 Query 63463 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAG 63522 | | || || || || || | || ||||| || ||||| ||||| || ||||| || || Sbjct 23501 ATTGGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAG 23560 Query 63523 ATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCAT 63582 ||||| |||||||| |||| |||||||| | || ||||| || || || | ||| Sbjct 23561 GTTGTAGGTCTCAATGGCTGCATCTATATCAGTGTTGTGGATTCCAACAGCTACTCTCAT 23620 Query 63583 TAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63642 | ||||||||| || | ||| | | || || ||||||| || |||||| || Sbjct 23621 GAGCATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTC 23680 Query 63643 CAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTT 63702 || || ||||| ||||| | ||||| ||||| || | || ||||| ||| | ||||| Sbjct 23681 TAATGTCTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTT 23740 Query 63703 GAGTTTATCCTTATATTTGTTA--ACTACATCCATGGTAATACTTG--AAATAATAGGAA 63758 ||| || || | ||| | || | ||| | ||| |||| | || || || Sbjct 23741 GAGGCGGTCTTTGT--TTGCAAGGACAATATCTAGGGTCT--CTTGGGAGATCATGGGGG 23796 Query 63759 AATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATA 63818 | || | |||| |||||||||||||| ||| | ||||||||| || ||||| || | Sbjct 23797 AGTGGCGCTTATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACATCACTGAACA 23856 Query 63819 GtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAAT 63878 || || || ||||| || || || || || || || | || || || |||||||||| Sbjct 23857 CCTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATCCGTGCAGCCAGGATGGCATAAT 23916 Query 63879 CCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCG 63938 | || || | || || ||||| || || || || || || |||||||| || || | Sbjct 23917 CTGGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACAG 23976 Query 63939 TTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATAT 63998 | || || || | || | |||||||| |||||||| | |||| | || || | | Sbjct 23977 TGGTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAA 24036 Query 63999 GATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGA 64058 || | || | |||||||| | || || ||||| ||||||||||||||||||| Sbjct 24037 ACTCTGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGA 24096 Query 64059 C 64059 | Sbjct 24097 C 24097 >seq15624 Length=12484 Score = 116 bits (128), Expect = 5e-21 Identities = 142/192 (74%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 ||||||| || || ||||| || | ||||||||||||| || ||||| || ||| | | Sbjct 11343 CATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAAGCAGCAT 11402 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGC--TTCCAGGCTATCAAATGG 62547 |||||||||| || || |||| | || |||| || || || || || || ||||| Sbjct 11403 AATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCA--CTTTCGAATGG 11460 Query 62548 ATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62607 |||| | |||||| || ||||| || | || ||||||||||| || |||||||| || Sbjct 11461 ATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGTCTGTG 11520 Query 62608 TCTCTTATTAGA 62619 | | | ||||| Sbjct 11521 GCGCATGTTAGA 11532 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| || ||||||||||| || || || | |||||||| |||| ||| || || || Sbjct 11855 TATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCCTAGATTCTGCTGGTTG 11914 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||||| | || || ||||| || || || ||| |||| ||||| || || |||| || Sbjct 11915 CTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACCCGTCTCTGTCTGTGAC 11974 Query 62912 TCTATAATCGCTTTCCA 62928 || ||||| || | ||| Sbjct 11975 TCAATAATGGCATACCA 11991 >seq19576 Length=429644 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| |||||| | || || || |||||||| || | ||||| Sbjct 417021 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGCCCAGGCATTAGACCCCTCTTTT 416962 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||| | |||| ||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 416961 TCAGCCAATAAATGGCGGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 416902 Query 32803 CAATAAGTCTCTCTCC 32818 | | || ||| || || Sbjct 416901 CCACAATTCTTTCACC 416886 >seq3431 Length=351 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||| | ||||| | ||| ||||| || || ||||||||||| ||||| || || | Sbjct 256 CCTCGTCGCGGCTAATAAGTTCATTGGAGAAAGTCAGTCCGGGCATCAGGCCTCGTTTCT 315 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGA 32778 | ||||| || |||| ||||| |||||||| |||| Sbjct 316 TCAGCCAGAAAATGGCGGCAAAGGATCCAGAGAAGA 351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633262418295200