Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq27510 127 2e-24 seq11038 120 3e-22 >seq27510 Length=34911 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| || || | || || || || ||||| | ||||||||| | | Sbjct 30135 GATGCAAATTTTTGTGAAGACCCTGACTGGGAAGACCATCACTTTGGAAGTGGAACCTAG 30076 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || || |||| ||| || || ||||| |||||||| || || || || Sbjct 30075 TGACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCA 30016 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || || || || || ||| | || ||| |||||| |||| || ||||| Sbjct 30015 GCAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCTGACTACAA 29956 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || ||||||||| | || || || |||| ||| | ||||| Sbjct 29955 CATTCAGAAGGAATCCACCCTCCACTTGGTGCTGCGTTTGAGAGGAGG 29908 >seq11038 Length=78219 Score = 120 bits (132), Expect = 3e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 129688 TTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACA 129747 |||| | ||| |||||||| || |||||||| ||| | |||| | ||||| ||| Sbjct 22779 TTGAGAGCAATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACA 22838 Query 129748 ATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATG 129807 || || | |||||| ||||| ||| ||||||||||||| || || ||||| ||| || Sbjct 22839 ATCTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTG 22898 Query 129808 TTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 || || ||||||||||||| |||||| || || || ||||| Sbjct 22899 TTACAGGCATCTTTGTACAACATGTAAGGTGTTCCTGTTTC 22939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419489303572030