Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq27510 168 1e-36 seq44130 122 2e-22 seq9418 84.2 4e-11 >seq27510 Length=34911 Score = 168 bits (186), Expect = 1e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || || | |||||||| || |||||||| || |||||||| || || ||| Sbjct 30136 CCTCCTCTCAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 30195 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||||| ||||| || || || || || || || ||||| || || Sbjct 30196 AGAGTGCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 30255 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| ||||| ||||| ||||| ||| || || ||||| | || ||| Sbjct 30256 ATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACT 30315 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 ||||| ||||||||||| || || |||||||| || || ||||||||| |||| Sbjct 30316 TCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTTGCT 30368 Score = 163 bits (180), Expect = 5e-35 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || |||||||| | | |||| |||||||| || ||||| || || || ||||| || Sbjct 29902 TAGTTTCCTCCTCTCAAACGCAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAG 29961 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || ||||| || | |||||||| | |||||| || ||||| || || || || ||||| Sbjct 29962 TCAGAGAGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCA 30021 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || || || || || ||||| || |||||||||||||| ||| |||||||| | | Sbjct 30022 GGAGGGATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGT 30081 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||| |||||||| || || || |||||||| || || || ||||| Sbjct 30082 TCCACTTCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATTTGCAT 30134 >seq44130 Length=14217 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || ||| | ||||| |||||||| || |||||||| || | Sbjct 11842 AGACGCAGGACAAGGTGAAGGGTGAATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 11901 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || | || || || || || || || || |||||||||||| Sbjct 11902 CCATCTTCAAGCTGCTTGCCAACAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 11961 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| |||||||| || | || || || |||| ||| | || || | || || Sbjct 11962 TTGTCCTGAATCTTGGCTATAACATTTTCAGTGATGTC-GCTGGGTTTGACCTGCAGAGT 12020 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || |||||||| || || || ||||| || Sbjct 12021 GATGGTCTTCCCAGTGAGGGTTTTCACAAAAATCTGTAT 12059 >seq9418 Length=8239 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTC 68416 || ||||| || || ||||| ||||| || |||||||||||| ||| | || || || Sbjct 3531 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC-GCTGGGCTCGACCTC 3589 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||||||| || |||||||| ||||| ||||| |||||||| Sbjct 3590 GAGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 3634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921084840694640