Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11038 269 5e-67 seq5499 84.2 4e-11 >seq11038 Length=78219 Score = 269 bits (298), Expect = 5e-67 Identities = 870/1342 (65%), Gaps = 44/1342 (3%) Strand=Plus/Plus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || | |||||||||||| || || || | || ||||| ||||||| || | Sbjct 22220 GTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTGTGTAGATGTTGCTGGTGTAGGC 22279 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 |||||| ||| ||||||| ||||| || || ||| || || |||||||| | || Sbjct 22280 TTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAGGCTGTGGGCATGGGGGCCAA 22339 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || ||||||||| ||||| ||||| | || | ||| ||||||||||| Sbjct 22340 CAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTCCAGTCCCA 22399 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | | | | | ||| ||| ||||||||||| ||||||| | || | || Sbjct 22400 GAGCTCAGTGGGCACCT----TTT-----CCCACATGTCATACTGCAGAATGCCTCTACT 22450 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 || || ||| ||| ||| || || || || | |||| || ||||| | Sbjct 22451 CACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTGCCAACTCCCAGCTTGC 22510 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCC 244449 || ||||| || |||||||||||||| |||||| | |||| | || || ||| Sbjct 22511 CTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCA-GCAGCTGGGCTT--- 22566 Query 244450 GCAGG----TGAAGGGGATGCC-CATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCG 244504 |||| | || |||| | ||| | |||||| | || || || |||||||| || Sbjct 22567 -CAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCA 22625 Query 244505 ATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTG 244564 || ||||| || ||||| |||||||| || | ||||| || || ||||| |||| Sbjct 22626 ATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTA 22685 Query 244565 CCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 ||| || | |||||||||||| | || | ||| ||| ||| | Sbjct 22686 ATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGAGGCAAGCTTTTTG 22745 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 ||||| | || | | ||| || | | ||| || |||||| || | | Sbjct 22746 AAGTCAAAG--GT-GCGTTCC--------GGAG----TAACATACATGTTGAGAGCAATG 22790 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||| ||| ||||||||||| || || | | || |||| |||||||| ||||| Sbjct 22791 GAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCAC 22850 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 | ||||||||| ||||||||||||| | ||| || || ||| ||| ||||| || Sbjct 22851 AAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCT 22910 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||| | |||| | || || || || ||| | ||| || | | ||| | Sbjct 22911 TTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACCACAAC 22970 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCT-TGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||||| || || || | ||||| || || | ||||| || Sbjct 22971 TGCTGAGCCTTGACCACCC-GCTTCACTCTACCCTCCTGTTCATATTGAGTGTAGAGCTT 23029 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||| ||||| ||||| ||| || | || |||||| |||||||| ||| Sbjct 23030 CTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACATCAGAGA 23089 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || | || | ||||||| |||||| || || |||||||| ||||| | ||| Sbjct 23090 CCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGCATAGAA 23149 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 |||||| | | ||||||||| || |||||||||||| ||||||| | |||||||| Sbjct 23150 GAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGAAGTCAAA 23209 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 || || | |||||| ||||||| ||| | || | || || || || || ||||| || Sbjct 23210 CACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTATTGCCACC 23269 Query 245164 CTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||||||| | | || ||| |||| | | | ||| | ||||| | ||| | Sbjct 23270 TTGGTCCA----CGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGCCAT 23325 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACA 245279 | |||| || || || || ||||| || | || | ||| | | | Sbjct 23326 TTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAACTGCTA 23385 Query 245280 TGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGC 245339 || | || || || || |||||||| || || |||| || || |||| Sbjct 23386 CACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAATGC 23445 Query 245340 CCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGC 245399 | || |||||||| ||||||| ||||| |||||| ||| |||||||| | | Sbjct 23446 CATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTATTGG 23505 Query 245400 TGCACGAGTTGAACAGAGTGGG 245421 ||| | ||||||||||||||| Sbjct 23506 TGCCTGCGTTGAACAGAGTGGG 23527 >seq5499 Length=1901 Score = 84.2 bits (92), Expect = 4e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||||| ||||||||||| |||||||||||||||||||| |||||||| || || Sbjct 1535 TTCATGCAAGAGGTGCAGGTAACGGAGGCGCGCTGCTTCTACGGGTTCCAGATCGCGATG 1594 Query 42537 GAGAACGTGCACTCTGAGGTGTAC 42560 |||||| | ||||| ||| ||||| Sbjct 1595 GAGAACATCCACTCGGAGATGTAC 1618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943788390553120