Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq10050 111 1e-19 seq11547 89.7 5e-13 >seq10050 Length=29434 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || |||| || |||||||||||||| || ||||| ||||||| ||| Sbjct 22556 TGGGCGATCATGTATGTTAGAAGTGAATAGCTGGCAATATTGAAAGGTACTCCCAGCCCC 22497 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 ||||| || || | |||||| ||||||||||| |||||||| || ||||| || ||| Sbjct 22496 ATGTCACCAGAGCGCTGATAAAGCTGACAGGACAGCTCACCATCGCACACATAGAACTGA 22437 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTC 20409 || | ||| || || || || ||||| | || ||| || Sbjct 22436 CAAAGAGCGTGGCATGGGGGCAGAGCCATGAGCGGCAAATC 22396 >seq11547 Length=21244 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || || | ||| || |||| || | |||||| ||||| | ||||| ||||||| ||| Sbjct 14632 TGGGCGATCATGTATGTTACAAGTGCATAGCTAGCAATACTGAAAGGTACTCCCAGCCCC 14573 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT-ACATAAAATTG 20367 ||||| || || | ||||| ||||||||||| |||||||| || ||| ||||| || || Sbjct 14572 ATGTCACCAGAGCGCTGATTAAGCTGACAGGACAGCTCACCATC-GCTCACATAGAACTG 14514 Query 20368 ACA 20370 ||| Sbjct 14513 ACA 14511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441115358280080