Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq27510 127 5e-24 seq9418 89.7 1e-12 >seq27510 Length=34911 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | ||| ||||| || ||||||| ||| || || || || Sbjct 30172 TCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGTTGCTTACCAGCAAAA 30231 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | ||| || | ||||| ||||| ||||| ||||| || || ||||||||| Sbjct 30232 ATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTT 30291 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || |||| || ||||| | ||||| || || || ||||| ||||| || Sbjct 30292 TCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACA 30351 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 30352 AAGATCTGCATTTTG 30366 >seq9418 Length=8239 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 || || ||||||||||| || || ||||| || || || | ||||| | || || ||| Sbjct 3531 CCCTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCGCTGGGCTCGACCTCG 3590 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| |||||||| || |||||||| ||||| |||||||| Sbjct 3591 AGGGTGATGGTCTTCCCCGTGAGAGTCTTCACGAAGATCTGCAT 3634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178949135506836