Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq27510 140 4e-28 seq33802 95.1 1e-14 seq16345 93.3 5e-14 seq40586 89.7 6e-13 seq37664 89.7 6e-13 seq29256 89.7 6e-13 seq22143 89.7 6e-13 seq14977 89.7 6e-13 seq10936 89.7 6e-13 >seq27510 Length=34911 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| ||||||| |||||| || | ||| ||||| ||||| ||||| |||| Sbjct 29908 CCTCCTCTCAAACGCAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 29967 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||||||||||||||| || || | ||||||||| | || Sbjct 29968 AGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGG 30027 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| |||||| ||| ||| |||| || | | ||||| || | |||||| Sbjct 30028 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGTTCCACT 30087 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| ||||| |||||||| Sbjct 30088 TCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATTTGCAT 30134 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||| | |||||| || | ||| |||||| || || ||||| |||| Sbjct 30136 CCTCCTCTCAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 30195 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || ||||| ||||||||||| || || || | ||||||||| | || Sbjct 30196 AGAGTGCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 30255 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||||| || ||| || || | | | | ||||| |||| || || Sbjct 30256 ATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACT 30315 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | ||||||||||| || || || ||||| |||||||| |||||||| Sbjct 30316 TCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCATTTT 30365 >seq33802 Length=59224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || || | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 5048 ATTTCCTCCCCGTCAGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 4989 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 4988 CACTATACTAACGAGGA 4972 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 2174 AAAGATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2115 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 2114 TCACCACTATACTAACGAGGA 2094 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 2489 AAATATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2430 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 2429 TCACCACTATACTAACGAGGA 2409 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||| Sbjct 2831 AAATATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2772 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 2771 TCACCACTATACTAACGAGGA 2751 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 6433 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 6374 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 6373 CACTATACTAACGAGGA 6357 >seq16345 Length=60839 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| | |||| || | | |||||||||| ||||||||||||||||||||| |||| Sbjct 33848 AAAAAGTACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 33789 Query 57058 TCACCACTATACTACCGAGGA 57078 |||||||||||||| |||||| Sbjct 33788 TCACCACTATACTAACGAGGA 33768 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||| || |||| || | | ||| |||||| ||||||||||||||||||||| || Sbjct 36061 AAAAATATTGACTCCACGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 36002 Query 57056 ACTCACCACTATACTACCGAGGA 57078 |||||||||||||||| |||||| Sbjct 36001 ACTCACCACTATACTAACGAGGA 35979 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 35529 TTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 35470 Query 57064 CTATACTACCGAGGAT 57079 |||||||| ||||||| Sbjct 35469 CTATACTAACGAGGAT 35454 >seq40586 Length=28695 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1850 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1909 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1910 TACTAACGAGGA 1921 >seq37664 Length=211294 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||| ||| |||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 102234 AAAAACTTTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 102175 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 102174 ACTTACCACTATACTAACGAGGA 102152 >seq29256 Length=33740 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 31622 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 31681 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 31682 TACTAACGAGGA 31693 >seq22143 Length=78845 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 18696 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 18755 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 18756 TACTAACGAGGA 18767 >seq14977 Length=4178 Score = 89.7 bits (98), Expect = 6e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||| ||||| |||| || | | ||| |||||| ||||||||||||||||||||| || Sbjct 804 AAACATTTTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 745 Query 57056 ACTCACCACTATACTACCGAGGA 57078 |||||||||||||||| |||||| Sbjct 744 ACTCACCACTATACTAACGAGGA 722 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 |||| |||| || | | ||| |||||| ||||||||||||||||||||| |||||||| Sbjct 2236 ATTTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 2177 Query 57062 CACTATACTACCGAGGA 57078 |||||||||| |||||| Sbjct 2176 CACTATACTAACGAGGA 2160 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| |||||||||| Sbjct 116 TTCCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 57 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 56 CTATACTAACGAGGA 42 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3728 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3669 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3668 TACTAACGAGGA 3657 >seq10936 Length=53695 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 29306 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29247 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 29246 TACTAACGAGGA 29235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542895957554080