Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq27510 140 3e-28 seq44130 95.1 1e-14 seq11038 84.2 2e-11 >seq27510 Length=34911 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || ||||||||||| || | || |||||| | |||||||||||||| || Sbjct 29938 GTGGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATCTTCAAGCTGCTTACCA 29997 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| |||| ||||||||| ||||| || || ||||| || || || ||| ||| Sbjct 29998 GCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACCCTCTTTGTCCTGGATCTTTGCCTTG 30057 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| | |||||||| | ||| | |||||| || |||| || Sbjct 30058 ACATTCTCAATGGTGTCACTAGGTTCCACTTCCAAAGTGATGGTCTTCCCAGTCAGGGTC 30117 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||||||||| Sbjct 30118 TTCACAAAAATTTGCAT 30134 >seq44130 Length=14217 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||||| || |||||||| || | || |||||| | ||| Sbjct 11848 AGGACAAGGTGAAGGGTGAATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 11907 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || |||| |||||| || || ||||| ||||| || || Sbjct 11908 TCAAGCTGCTTGCCAACAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 11967 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTG-TATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||| || | | || || | || | || | || | | ||| | ||| Sbjct 11968 TG-AATCTTGGCTATAACATTTTCAGTGATGTCGCTGGGTTTGACCTGCAGAGTGATGGT 12026 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| || || | ||||| || ||||| || || || Sbjct 12027 CTTCCCAGTGAGGGTTTTCACAAAAATCTGTATGTT 12062 >seq11038 Length=78219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || |||||||| || ||||| | ||| || || | || | |||||| || | |||| Sbjct 22791 GAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCAC 22850 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 || ||||||||| |||||||||| || | ||| || || |||| || || ||| Sbjct 22851 AAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCT 22910 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTC 154735 |||||||| ||||| || || || ||||| Sbjct 22911 TTGTACAACATGTAAGGTGTTCCTGTTTC 22939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499353369679280