Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq11038 105 7e-18 seq15624 95.1 1e-14 >seq11038 Length=78219 Score = 105 bits (116), Expect = 7e-18 Identities = 708/1115 (63%), Gaps = 41/1115 (4%) Strand=Plus/Minus Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || ||||| | ||| || ||||| || || ||||| | || | ||||||| | || Sbjct 23344 GGAACAAATGGTAACTCAAATGGCCTTGTGCCGATGCTGAGAGTGTACAACAACACCGCA 23285 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 |||||||||||||| ||||| | | |||| |||| || | || || ||||| Sbjct 23284 CGCTACGTGGACCAAGGTGGCAATAAACGACCGGGTGCTTTTGCCATATACCTGGAGCCA 23225 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||| || ||| | ||| | || ||| |||||| || || || | || Sbjct 23224 TGGCACTTTGATGTGTTTGACTTCCTTGAGCTGAAGAAGAACACTGGTAAAGAGGAGCAG 23165 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 ||||| ||||||||||||| || || ||| | || || || || ||||| | || || Sbjct 23164 AGGGCACGAGACCTCTTCTATGCCCTATGGATCCCTGATCTGTTCATGAAGAGGGTGGAA 23105 Query 94321 AAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGT 94380 || ||| | |||| ||| | || |||| ||| || || || || || ||| Sbjct 23104 AACAACCAGGACTGGTCTCTGATGTGCCCCAGTGAGTGCCCTGGGTTGGATGAGTGTTGG 23045 Query 94381 GGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTT 94440 || | ||||| | | || ||| || ||| | |||| | | | | ||| Sbjct 23044 GGGGAGGAGTTTGAGAAGCTCTACACTCAATATGAACAGGAGGGTAGAGTGAAGCGGGTG 22985 Query 94441 ATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCC 94500 | | ||| | || ||||| || ||| | || ||| || || || || || Sbjct 22984 GTCAAGGCTCAGCAGTTGTGGTATGCCATCATCGAGTCTCAGACAGAAACAGGAACACCT 22925 Query 94501 TACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGAT 94559 ||||| |||| ||| || |||| ||| ||| ||||||||| | | || || Sbjct 22924 TACATGTTGTACAAAGATGCCTGT-AACAGGAAGAGTAACCAGCAGAATTTGGGCACCAT 22866 Query 94560 CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGT 94619 ||| || || ||||||| |||||||| |||||||| || || | || || Sbjct 22865 CAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTATACAAGCAAAGATGAAGTGGCCGT 22806 Query 94620 GTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGC 94679 |||||| ||| |||||| || || || | || ||| ||| | || || Sbjct 22805 CTGTAACTTGGCCTCCAT--TGCTCTCAACAT--GT-----ATG-TTACTCCGGAAC-GC 22757 Query 94680 TTCGTTCGATCTGGAGGAGCTTGTGAACTTCG--CGGGAAGG--ATGGTCTTGAACCTGA 94735 | || || | | |||||| | ||| | || | || || ||||| | Sbjct 22756 -ACCTTTGACTTCAAAAAGCTTG----CCTCGGTCACTAAAGTAATTGTAAGAAACCTCA 22702 Query 94736 ACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGC 94795 ||| | | || |||| |||| |||||| || || || || ||||| |||||| | | Sbjct 22701 ACAAGATCATTGACATTAACTACTACCCAGTTCCTGAAGCAGAGAATTCAAACAAGCGCC 22642 Query 94796 ATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGC 94855 | |||| ||||| || || || |||||| | || || || | | | |||||| | Sbjct 22641 ACAGGCCAATCGGGATTGGTGTGCAGGGTCTTGCAGATGCCTTCATCCTCATGCGTTATC 22582 Query 94856 CCTACGA---CTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTATT 94912 | | || | ||| | | | || | ||||| | | || || || | ||| || | Sbjct 22581 CATTTGAAAGCCCTGAAG-CCCAGCTG--CTGAATATCCAGATCTTTGAGACCATCTACT 22525 Query 94913 ACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAATCG 94971 | | ||| | || ||| | | | |||| |||| | | ||||| | || | Sbjct 22524 ATGCTGCCCTGGAGGCAAGCTG-GGAGTTGG-CAGA--AAAAGATGGGCCTTATGAGACA 22469 Query 94972 TTCCGCGGATCGCCCTTG-GAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCC 95030 | || || || || || | | | |||||| | |||| ||| | |||| | ||| Sbjct 22468 TACCCAGGCTCTCCAGTGAGTAGA-GGCATTCTGCAGTATGACATGTGGGAAAAGGTGCC 22410 Query 95031 CTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGATGTTATCAAACACGGTGTGAA 95087 | | | || | |||| ||||||| || | | | || || ||||||||||||| Sbjct 22409 CACTGAGCTCTGGGACT-GGAAGCTGCTTAAGGAGAAGA--TTGCTAAACACGGTGTGAG 22353 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 |||| ||| | |||||||||||||||| |||||||| || || || || |||||||| Sbjct 22352 AAACAGTCTGTTGTTGGCCCCCATGCCCACAGCCTCCACAGCACAAATACTCGGCAACAA 22293 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACA 95182 ||||| ||||| ||| |||| |||| | |||| Sbjct 22292 TGAGTCCATCGAAGCCTACACCAGCAACATCTACA 22258 >seq15624 Length=12484 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| ||||||| |||||||| |||||||| || |||||| Sbjct 10908 CATGGTGTGAGGAACAGCCTGCTCCTGGCCCCAATGCCCACAGCCTCCACTGCCCAGATC 10849 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | || | | |||| |||| | |||| | ||||||| Sbjct 10848 CTCGGCAACAACGAGTCCATTGAGGCTTACACCAGCAACATTTACACTCGTAGGGTGCTT 10789 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | ||||| |||| |||| || Sbjct 10788 TCAGGGGAGTTCCAGGTCAGCA 10767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494434640325520