Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq11038 109 5e-19 seq27510 98.7 1e-15 >seq11038 Length=78219 Score = 109 bits (120), Expect = 5e-19 Identities = 433/675 (64%), Gaps = 21/675 (3%) Strand=Plus/Plus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | ||| | ||| || || ||||| |||||||| || |||| || || Sbjct 22266 TTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAGGCTGTG 22325 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 |||||| |||| ||||| | || | || ||||| ||| | ||||| | | Sbjct 22326 GGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTCCTTAAGC 22385 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| ||||| ||| | | || | | ||||||||| ||||| | | ||| Sbjct 22386 AGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATACTGCAGAATGCCT 22445 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAG 153314 | ||| | ||| ||| | | || || || || || |||| || ||| Sbjct 22446 CTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTGCCAACTCCCAG 22505 Query 153315 CTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCT 153374 || ||||| || || ||||||| ||||| || ||| || |||| || | ||| Sbjct 22506 CTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCT 22565 Query 153375 TCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCG 153434 || ||| || | || |||| || | ||||| || || |||||||| | ||| Sbjct 22566 TCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCA 22625 Query 153435 ACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAGT 153489 | ||||| || | || || ||| || || || | | |||| |||| Sbjct 22626 ATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAAC----TGGG-TAGT 22680 Query 153490 GATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTT 153549 || || || || ||||||||||| | || | |||||||| | || ||| | Sbjct 22681 AGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGAGGCAAGCT 22740 Query 153550 TCTCGAAATCATAGGT-CATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCC 153608 | | ||| ||| |||| | || || | | || ||| || | ||||| || ||| Sbjct 22741 TTTTGAAGTCAAAGGTGCGTTCCGGAGTAACATA--CAT--GTTGAGAGCAATGGAGGCC 22796 Query 153609 AGATTACAGACGGCCGTCTCTTCGGCGTCGC---TGTACTGCACGATCTCGGCGCAGAGG 153665 | ||||||||||| | |||| | | || | |||| ||| ||||| | ||| | | Sbjct 22797 AAGTTACAGACGGC---CACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACAAG 22853 Query 153666 TTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTG 153725 || |||||||| ||| ||||||||| ||||| || || || | || || || |||||| Sbjct 22854 TTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTG 22913 Query 153726 AAGAGCATGTACGGT 153740 | | |||||| ||| Sbjct 22914 TACAACATGTAAGGT 22928 >seq27510 Length=34911 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || || || | | | |||||||| || ||||||||||| Sbjct 30136 CCTCCTCTCAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 30195 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || ||||| ||||| | | | || || | ||| ||||| ||||| Sbjct 30196 AGAGTGCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 30255 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| || || ||| || || | | ||| | ||||| ||| ||| || Sbjct 30256 ATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACT 30315 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||||||||| || || ||||| |||||||| Sbjct 30316 TCCAAAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCAT 30362 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| |||||||| || || || | | | || ||||| |||||||||||||| Sbjct 29908 CCTCCTCTCAAACGCAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAG 29967 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || ||||| | | || || | ||| ||||| ||||| Sbjct 29968 AGGGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGG 30027 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| |||||||| ||| ||| || | | || | |||||| | | ||||| Sbjct 30028 ATACCCTCTTTGTCCTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGTTCCACT 30087 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || |||||||| || || |||||||| ||||| Sbjct 30088 TCCAAAGTGATGGTCTTCCCAGTCAGGGTCTTCACAAAAATTTGCAT 30134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495972942548640