Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq11038 136 4e-27 >seq11038 Length=78219 Score = 136 bits (150), Expect = 4e-27 Identities = 492/757 (65%), Gaps = 26/757 (3%) Strand=Plus/Plus Query 146043 GAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAG 146102 |||| |||| | |||| |||| || | ||||||||| || | ||| || | | Sbjct 22199 GAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTGT 22258 Query 146103 ATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGT 146162 || | |||||||||| | | |||| ||||| ||||| |||||||| || || || | Sbjct 22259 GTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGA 22318 Query 146163 AGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTC 146222 || || |||||| |||| || || | ||||||||| |||||| | |||||| || Sbjct 22319 GGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTC 22378 Query 146223 CC---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTA 146279 | | || || ||| | ||| | | || ||||| | | | |||| || Sbjct 22379 CTTAAGCAGCTT---CCAGTCCCAGA---GCTCAGTGGGCACCTTTTCCCACATGTCATA 22432 Query 146280 ATGCATAGTGCCGCGGAACAGGGGGCTATTCTCG-TACGATTCATAAGGACCGTCGATCT 146338 |||| | |||| | || || | || | || | |||||||| || || | | Sbjct 22433 CTGCAGAATGCCTCTACTCACTGGAG-AGCCTGGGTATGTCTCATAAGGCCCATCTTTTT 22491 Query 146339 TGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGT 146398 |||| || ||||| || ||||| || | | |||| |||||||| |||| | | Sbjct 22492 CTGCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATAT 22551 Query 146399 TGACGCTCCTGGCCTCCTCG-CTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGC 146456 | | || |||| || | | || || | || ||| || | || | ||||| || || Sbjct 22552 TCA-GCAGCTGGGCTTCAGGGCTTTCAAATGG-ATAACGCATGAGGATGAAGGCATCTGC 22609 Query 146457 GAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGC 146516 |||||||| | || | || | || | ||| |||||| ||| | || | | Sbjct 22610 AAGACCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGG 22669 Query 146517 AGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAA 146576 | || |||| ||| |||| |||||||||||||| || | || | | ||| || | Sbjct 22670 AACTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGAC 22729 Query 146577 ACGATTCA-GCAGGACATAGTCAAATGT---TTTAGTTTTAACGTTGACGCACTTGTTGA 146632 ||| || || ||||||| || || | |||| | || |||||| Sbjct 22730 -CGAGGCAAGCTTTTTGAAGTCAAAGGTGCGTTCCGGAGTAACAT------ACATGTTGA 22782 Query 146633 CGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCT 146692 || || |||||||||||||| ||||| || || ||| ||||| |||||||| Sbjct 22783 GAGCAATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCT 22842 Query 146693 CGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGC 146752 | | ||| | ||| ||||| |||||| |||||||||| | |||||||| | |||| | Sbjct 22843 CAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTAC 22902 Query 146753 AGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 ||| || ||||| | |||||| ||| || ||||| Sbjct 22903 AGGCATCTTTGTACAACATGTAAGGTGTTCCTGTTTC 22939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475223452270880