Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq14925 113 7e-20 seq38854 111 2e-19 seq7084 87.8 3e-12 >seq14925 Length=171059 Score = 113 bits (124), Expect = 7e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 ||||| | ||||| ||||| || || || | || || || ||||| |||||||||||| Sbjct 58518 GTTGCAGAATTCACTATGTCAAATCCAACTTTGCCTCCAAATGTGCTTGGTTTCCAGTAC 58577 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 || || || ||| |||| ||| || ||||||| |||||| |||||||||| ||| Sbjct 58578 ATGGGAGAACATATGGGGTTCCCCAATAGTCCTTTCAGGGAAAAGGGAGCCCCCATCTCC 58637 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | |||||||| || || || || || ||||||| ||| || | | || |||| || Sbjct 58638 ACCATGCTCTCTCCAAATATTGCTCCTGGACGCGTTTTCTCCAACAAGAGACCAGGATAA 58697 Query 9113 AGTTCGACAGCCTCGACGTCGCCAT 9137 | ||| | ||| | | ||| |||| Sbjct 58698 AATTCAAGAGCATTTATGTCACCAT 58722 >seq38854 Length=59830 Score = 111 bits (122), Expect = 2e-19 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || | |||||| || || || | || ||||| ||||| || ||||| || | Sbjct 59614 GCCGTGTTGATGATGTCGAAGCCCACCTGGCCTCCGAAAGTGCTTGGCTTCCAATATTCA 59555 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| |||| ||||||| ||||| | ||| || || || |||| || | Sbjct 59554 GGGGAGCAGATGGCGTTTCCCATGAGGCCTTTGAGGGAGAAGGGGGCGCCCATTTCAACC 59495 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| ||||| |||||| | | | || || ||||| | | || | ||| || Sbjct 59494 ATGGTCTCCCCGAAAATGGCATCCTGTCTGGGCTTCTCGACCAGCAGACCCGGGTACAGC 59435 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || || || || |||| ||||| | | ||||| ||| || || || || || ||| Sbjct 59434 TCCACGGCGTCCACGTGTCCATACATCTCCTCCAAAATGGCCGCCATTTCTTTATCTCCT 59375 Query 9176 ACAA 9179 |||| Sbjct 59374 ACAA 59371 >seq7084 Length=102118 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 ||||| |||| |||| | || ||| || || || || || ||||| ||||||||| Sbjct 52325 GTTGCACTTTTGACGACCTGAAAGCCTGTCTCTCCTCCAAATGTACTGGGCTTCCAGTAC 52384 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||||||||||| | || ||| | ||||| | ||||| ||||| |||| ||| Sbjct 52385 TCCGGGGAGCAGAGGGGATTTCCCAGCAAACCTTTTAGAGAAAAAGGAGCGCCCATCTCC 52444 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTC 9093 | || ||||| || |||||||| || || |||| ||| || Sbjct 52445 ACCATACTCTCCCCAAAGATGGCTCCTGGCCGCGTTTTCTC 52485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723305867550800