Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq27510 131 4e-25 seq44130 104 6e-17 >seq27510 Length=34911 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | |||||| || || ||||| || | ||||||||||| | || | ||||| Sbjct 29922 CAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGACCATC 29981 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| || ||||| || || | ||||||||| ||| || || ||| || Sbjct 29982 TTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGAGGGATACCCTCTTTGTC 30041 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| ||| || || | |||||| | | ||| || ||||| ||||| || Sbjct 30042 CTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGTTCCACTTCCAAAGTGATGGT 30101 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||||||||| Sbjct 30102 CTTCCCAGTCAGGGTCTTCACAAAAATTTG 30131 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| |||| ||||||||||| | ||| | |||||| Sbjct 30151 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCT 30210 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || || || || | ||||||||| ||| || ||||| || Sbjct 30211 TCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATACCTTCCTTATCT 30270 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| ||| | ||||| | | || || ||||| ||||| || Sbjct 30271 TGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCAAAGTGATGGTT 30330 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || || || || ||||| || || |||||| Sbjct 30331 TTACCAGTCAGGGTCTTAACAAAGATCTG---CATTTT 30365 >seq44130 Length=14217 Score = 104 bits (114), Expect = 6e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||||||||| || || | || || |||| ||||||||| | | || | ||||| Sbjct 11847 CAGGACAAGGTGAAGGGTGAATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 11906 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| |||||||| || | ||||| || | |||||| || || ||| ||||| || Sbjct 11907 TTCAAGCTGCTTGCCAACAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTC 11966 Query 199537 CTGAATCTTTTGCT-TCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 ||||||| || ||| | || ||| | |||| | | || || | || ||||| | Sbjct 11967 CTGAATC-TTGGCTATAACATTTTCAGTGATGTCGCTGGGTTTGACCTGCAGAGTGATGG 12025 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| || ||||| |||||||||||||| || Sbjct 12026 TCTTCCCAGTGAGGGTTTTCACAAAAATCTG 12056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178216773616354