Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq27510 134 1e-26 seq44130 98.7 1e-15 seq5499 91.5 1e-13 >seq27510 Length=34911 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || |||||||| | || || || | | Sbjct 30134 ATGCAAATTTTTGTGAAGACCCTGACTGGGAAGACCATCACTTTGGAAGTGGAACCTAGT 30075 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||||||||| || || | ||||| Sbjct 30074 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAG 30015 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| ||| || || ||||| || || | ||||||||| ||||||||| Sbjct 30014 CAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCTGACTACAAC 29955 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| | || || || |||||||||||||||||||| || Sbjct 29954 ATTCAGAAGGAATCCACCCTCCACTTGGTGCTGCGTTTGAGAGGAGG 29908 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || || || || ||||||||||| | || || ||| | Sbjct 30365 AAAATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCG 30306 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | ||||| | || | || |||| || || || || || || | || Sbjct 30305 AGTGACACAATTGAAAACG-TGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCTGA 30247 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| |||| || || || || || || || | ||||| ||| ||||| Sbjct 30246 CCAGCAGAGGCTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGCACTCTCTCTGACTA 30187 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || |||||||| ||| ||||||| || Sbjct 30186 CAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTACGTCTGAGAGGAGG 30136 >seq44130 Length=14217 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || || || || || || ||||| ||||| || || |||||||| | | ||| | || Sbjct 12062 AACATACAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGCAGGTCAAACCC 12003 Query 38301 ACCGACAGCG-TGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | ||||| | || ||| | ||| || || || | ||||| || || |||||| | || Sbjct 12002 AGCGACATCACTGAAAATG-TTATAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGA 11944 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | | ||||| ||||| || || | ||||||||| |||||| Sbjct 11943 TCAGCAGAGGCTGATCTTTGTTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTA 11884 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||||| || ||| || || || | || |||||| | | || |||| Sbjct 11883 CAACATCCAGAAAGAATTCACCCTTCACCTTGTCCTGCGTCTCTGGGGTGGCC 11831 >seq5499 Length=1901 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/116 (78%), Gaps = 4/116 (3%) Strand=Plus/Minus Query 133168 TAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAA 133225 |||||||||||||| || | ||||| |||||||| | ||||||||| ||||| || | Sbjct 1638 TAGGTGTCGATGAGCAGGCTG--TACATCTCCGAGTGGATGTTCTCCATCGCGATCTGGA 1581 Query 133226 AGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 | ||||| ||||| |||||||| |||||||| ||||| ||| ||||| ||| Sbjct 1580 ACCCGTAGAAGCAGCGCGCCTCCGTTACCTGCACCTCTTGCATGAAGCGCTCCACC 1525 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 |||||| || |||||||| |||||||| ||||||||||||||||||| ||||| || Sbjct 1434 GACCAGGTTCTCGTTGACAATGCCGTCACTGGCGGCGAAAAAGGCCAAAACGTGAGAAAT 1375 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 ||| | ||| | ||| |||| |||||||| || ||| ||||||||||| || Sbjct 1374 GAAGAACCTCTCATCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCTTTGGACAGGTCGAC 1315 Query 133398 CT 133399 || Sbjct 1314 CT 1313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499881061710080