Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq43552 163 1e-34 seq27510 102 3e-16 seq44075 96.9 1e-14 seq18256 84.2 9e-11 >seq43552 Length=261649 Score = 163 bits (180), Expect = 1e-34 Identities = 285/414 (69%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || |||||| | | |||| | || |||||||||| || | ||| ||| |||||| Sbjct 30990 GGCAAGCCCAAAGTAGAAGTGGAGTACAAAGGTGAAATAAAGGCGTTTTATCCAGAAGAA 30931 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || |||||| | ||| ||||| |||| ||||| ||| | || | Sbjct 30930 ATCTCGTCAATGGTTTTGGTTAAGATGAAGGAAATTGCAGAGGCGTATTTGGGGAAGAGA 30871 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | ||||||| || || || || ||||||||||| || | ||||| ||||| || Sbjct 30870 GTGTCCAATGCAGTCATCACAGTCCCTGCTTATTTCAACGACTCCCAACGCCAAGCCACA 30811 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||| |||| | ||||| || |||| || |||||||| || ||| Sbjct 30810 AAAGATGCCGGAGTTATTTCTGGCCTGAATGTACTGAGAATCATCAATGAACCAACCGCA 30751 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 |||||| | |||||||| |||| || || ||| || || |||| || | | Sbjct 30750 GCTGCTATTGCATATGGTCTAGACAAGGGAA---AAAGAGGGGAGCGAAATGTTCTCATT 30694 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||| | ||||| || ||| ||| || | || ||||||||||||| | ||| Sbjct 30693 TTTGATCTGGGTGGTGGCACTTTTGACGTATCCATCCTGACAATTGAAGATGGTATTTTT 30634 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 ||||| || || || || || || || | || || ||||| |||| ||| Sbjct 30633 GAAGTGAAAGCCACAGCCGGCGACACACACTTGGGCGGAGAAGACTTTGACAAT 30580 >seq27510 Length=34911 Score = 102 bits (112), Expect = 3e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || ||||| || |||||||||||||| || ||| | || ||||| | Sbjct 30363 AATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCGAG 30304 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||| | |||||| | || || || |||||||||||||| || |||||||| || Sbjct 30303 TGACACAATTGAAAACGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCTGACCA 30244 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | ||||| | || || ||||| |||||||| | ||| | | || || || Sbjct 30243 GCAGAGGCTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGCACTCTCTCTGACTACAA 30184 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACTGAGAGGA 391274 || | ||||| | || || ||||| || || | ||||||||| Sbjct 30183 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTACGTCTGAGAGGA 30138 >seq44075 Length=47006 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||| | | |||| || | ||||| || || || ||||||||| | || || || || || Sbjct 4602 AGTAAATAATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGTCAGGCTAC 4661 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||||||| ||| |||| | ||||||||||| ||||| ||||| || ||||| Sbjct 4662 AAAAGATGCAGGAGTCATTTGTGGTCTTAATGTTCTTCGCATTATCAATGAGCCAACAGC 4721 Query 451432 AGCTGCTCTAGCATATGG 451449 |||||| | || || || Sbjct 4722 TGCTGCTATTGCTTACGG 4739 >seq18256 Length=57157 Score = 84.2 bits (92), Expect = 9e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451475 GaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCA 451534 || || |||||| | || |||||||| ||||| || || ||| ||| | || | Sbjct 31517 GAGAAGAATATTCTTGTGTTTGATTTGGGTGGTGGCACATTTGACGTCTCTCTTCTGACC 31458 Query 451535 ATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAA 451594 ||||| | || ||||||||||| ||||||||||| || || ||||||||||||||| Sbjct 31457 ATTGACAACGGTGTATTTGAAGTGGTCGCAACCAATGGGGACACCCATCTAGGAGGTGAA 31398 Query 451595 GATATTGAT 451603 ||| | ||| Sbjct 31397 GATTTCGAT 31389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974537203171496