Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq43552 327 9e-84 seq44075 114 1e-19 seq43642 95.1 9e-14 >seq43552 Length=261649 Score = 327 bits (362), Expect = 9e-84 Identities = 922/1408 (65%), Gaps = 12/1408 (1%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| || || ||||| ||||| | || ||||| || ||||| || ||||| Sbjct 29816 GCAGAGACATTGAGGATGCCATTAGCATCGATGTCGAATGTTACCTCAATCTGTGGGACT 29875 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| | || ||||||||||| || | ||| | || || || || |||||| Sbjct 29876 CCTCTTGGGGCTGGTGGGATCCCCGTCAGGTCAAACTTGCCAAGGAGGTTGTTGTCTTTA 29935 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || | | |||||| || || | ||||| || | | || ||||| || || Sbjct 29936 GTCATGGCCCTTTCACCTTCAAACACCTGGATGAGCACACCTGGCTGGTTATCGGAGTAG 29995 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || | || | | || || ||| || || || ||||| | | || | |||| Sbjct 29996 GTGGAGAAGATTTGGGTTTGTTTGGTGGGGATGGTGGTGTTACGCTTGATCAACGCGGTC 30055 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || | || ||||||||||| | || | ||| || |||| ||||| | | | | Sbjct 30056 ATTACTCCTCCTGCTGTTTCAATGCCCAAAGACAGTGGAGCAACATCTAGCAAAAGGAGG 30115 Query 517559 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | || | || || || | || | || ||||| || || | ||||| ||||| Sbjct 30116 TCCTGGACATTCTCTGAGGTGTCCCCCATCAGGATAGCAGCCTGTACCGCAGCTCCATAG 30175 Query 517619 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 517678 || || |||||||| || || | ||| || | | | ||||| || || | Sbjct 30176 GCCACCGCTTCATCTGGGTTGATGCTTTTGTTCAACTCCCTTCCATTAAAGAAGTCCTGC 30235 Query 517679 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACC 517738 || |||| | | || ||||| | | ||||| ||||| | || || || | | | Sbjct 30236 AGTAGTTTTTGGATTTTGGGAATTCTCGTGGATCCACCAACCAGGACTATGTCGTTGATC 30295 Query 517739 TGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTA 517798 | || || |||| || | || |||| |||| || || || || || | || Sbjct 30296 TTGGACTTGTCCATCTTGGCGTCTTGTAAAGCTTTCTCTACAGGGTCTAGCGTTCCCCTG 30355 Query 517799 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 517858 || | |||||| |||||||| ||| |||| | ||| | | | | | |||||||| Sbjct 30356 AAGAGGTCTGAGTTGAGTTCTTCAAATCTAGCGCGAGTGATTGAGGTGTAAAAATCAATT 30415 Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 517918 ||||| | | ||| |||| ||| || | | ||| || || ||||| | | || Sbjct 30416 CCTTCATATAGAGAGTCAATTTCGATGCTTGCTTGGGTGCTGGATGATAGGGTCCTCTTG 30475 Query 517919 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT--TGCTGATTGATTCAAATCTG 517976 || |||||||| || || | || || | | ||| | || | ||| | | ||| Sbjct 30476 GCGCGTTCACAAGCCGTTCGCAGCCTCCTCACTGCTCTCTTGTT--TTGGCTAATGTCTT 30533 Query 517977 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 518036 | || | |||||||| || || |||||| | | || | |||||| ||||| |||| Sbjct 30534 TCTTGTGCTTTCTCTTAAACTCATCAACAAAGTGCTTCACCATACGATTGTCAAAGTCTT 30593 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 | || ||||| | || | || | || ||| | |||| |||| |||||||||| | Sbjct 30594 CTCCGCCCAAGTGTGTGTCGCCGGCTGTGGCTTTCACTTCAAAAATACCATCTTCAATTG 30653 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 || | | ||| ||| || |||||||||| ||||||||| || ||||| || Sbjct 30654 TCAGGATGGATACGTCAAAAGTGCCACCACCCAGATCAAAAATGAGAACATTTCGCTCCC 30713 Query 518157 TGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 518213 |||| ||| || || |||||||| |||| |||||| || ||||||||||| || | Sbjct 30714 C-TCTT--TTTCCCTTGTCTAGACCATATGCAATAGCAGCTGCGGTTGGTTCATTGATGA 30770 Query 518214 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 518273 |||||| ||||| || |||| ||| ||| |||||||| |||||||| | ||| || | Sbjct 30771 TTCTCAGTACATTCAGGCCAGAAATAACTCCGGCATCTTTTGTGGCTTGGCGTTGGGAGT 30830 Query 518274 CGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACCAATATAAGCG 518332 |||| ||||| ||||| || || || || |||| | ||| |||| |||| ||| || Sbjct 30831 CGTTGAAATAAGCAGGGACTGTGATGACTGCATTGGACACTCTCTTCCCCAA-ATACGCC 30889 Query 518333 CTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGC 518392 ||| ||| ||||| ||| |||| |||||| || |||| |||||| || | | Sbjct 30890 TCTGCAATTTCCTTCATCTTAACCAAAACCATTGACGAGATTTCTTCTGGATAAAACGCC 30949 Query 518393 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTA 518452 || |||| || || ||||| | | || || || || | || ||||| Sbjct 30950 TTTATTTCACCTTTGTACTCCACTTCTACTTTGGGCTTGCCACTGTCACTGATGACTTTG 31009 Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || ||||| ||||| || ||||| || | ||||||| ||| | ||| || || | | Sbjct 31010 AAAGGCCAAAGCTTCATGTCAGATTGCACGATATGGTCATCAAATTTTCTCCCGATGAGT 31069 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 | || |||||||| || || || | || || || || | || | ||||||||| || Sbjct 31070 CTCTTGGCATCAAAGATGGTGTTAGCCGGGTTCATGGCCACCTGGTTTTTGGCTGCGTCA 31129 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 ||||| || | || || || || || | |||||| || || ||||| || || || Sbjct 31130 CCAATTAGCCGCTCGGTGTCAGTGAAGGCAACATAACTGGGGGTGGTGCGGTTGCCCTGG 31189 Query 518633 TCATTCGCAATAATTTCAACTTTACCAT 518660 || || || || || || ||||| |||| Sbjct 31190 TCGTTGGCGATGATCTCCACTTTGCCAT 31217 >seq44075 Length=47006 Score = 114 bits (126), Expect = 1e-19 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| |||||| || ||||||||||| ||||| || ||||| |||||||| | ||| | | Sbjct 5965 GCAGACACATTCAGTATACCATTGGCGTCCAAGTCGAATGTTACTTCAATCTTAGGAATC 5906 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || || || | || |||||||| ||||| |||| | |||| | | ||||||||||| Sbjct 5905 CCCCTTGGACCTGGGGGGATCCCAGTCAAATCAAATTTCCCCAAACTGTTATTATCTTTG 5846 Query 517379 GTGAATTTTCGTTCACCCTCGAA 517401 || ||| || ||||||||| || Sbjct 5845 GTCAATGATCTTTCACCCTCAAA 5823 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| ||||||||| ||||| ||||| ||||| | | ||||||||||||| | Sbjct 4739 CCGTAAGCAATAGCAGCAGCTGTTGGCTCATTGATAATGCGAAGAACATTAAGACCACAA 4680 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || |||||||||||| || || || | || ||||| || || || || || ||||| Sbjct 4679 ATGACTCCTGCATCTTTTGTAGCCTGACGCTGAGAATCATTGAAGTAGGCTGGCACAGTC 4620 Query 518297 ATAACGGCATCAGTTACTT 518315 | ||| |||| | |||||| Sbjct 4619 ACAACAGCATTATTTACTT 4601 Score = 93.3 bits (102), Expect = 3e-13 Identities = 204/304 (67%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 ||||| || || |||| |||||||| |||||| | | |||||| ||||| | | Sbjct 5144 TCAATCCCCTCAAACAGAGAATCAATTTCAATGCTTGCTTGAGTGCTGGAAGACAAGGTG 5085 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCA 517970 || || || | ||||| ||||| | || | || | | |||||| || || | | Sbjct 5084 CGCTTGGCCCTCTCACAGGCTGTGCGAAGGCGACGCATTGACCTTTTGTTGGTTCTT--A 5027 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 518030 ||| ||| | || | ||||| || | | | | | || | ||||||||||| Sbjct 5026 TGTCTACTTTGTGCTTACGGTTGAACTCAGTCATAAAGAAGTTCACCATACGATTATCAA 4967 Query 518031 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 518090 |||||||||| || || | ||||| |||| ||||| | |||| |||| || || | Sbjct 4966 AATCTTCACCACCTAAATGAGTATCCCCTGCTGTAGCCTTCACTTCAAAAATACCTTCGT 4907 Query 518091 CAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 518150 ||| | || || | |||||| || || || |||| |||||| || || ||||||| Sbjct 4906 CAATACTCAGAATGGAGACATCAAATGTGCCGCCCCCCAAATCAAAGATGAGCACATTCA 4847 Query 518151 TTTC 518154 |||| Sbjct 4846 TTTC 4843 >seq43642 Length=49772 Score = 95.1 bits (104), Expect = 9e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 ||| |||||||||||||||||||| | ||||| ||||||||||| || ||||| ||||| Sbjct 32068 CACGTTAAGAATACCATTGGCATCAATGTCAAAGGTGACTTCAATCTGGGGGACACCTCT 32127 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 517380 ||||||| ||||| || | | ||| ||||||| | || || |||||||| Sbjct 32128 TGGAGCAGGCGGGATACCAGTGAGCTCAAACTTTCCCAGGATGTTGTTGTCTTTAGT 32184 Score = 86.0 bits (94), Expect = 5e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || | ||||| |||| || || || ||||||||||| || || | || ||| Sbjct 33188 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATGATACGCAGCACA 33247 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| ||| |||||||| || || || | || || || || || || Sbjct 33248 TTCAGCCCAGCAATAGCTCCAGCATCTTTGGTCGCCTGGCGCTGGGAGTCATTGAAGTAG 33307 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| ||||| | ||| |||| Sbjct 33308 GCAGGGACAGTTACAACTGCAT 33329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778506877855372