Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq43552 376 3e-99 seq44075 132 6e-26 seq43642 100 4e-16 >seq43552 Length=261649 Score = 376 bits (416), Expect = 3e-99 Identities = 1037/1580 (66%), Gaps = 12/1580 (1%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || | || || || || |||||||| ||||| | || || || ||||| Sbjct 29696 TCATCCTCTGCCTTGTATTTCTCTGCATCTTGAACCATTTGCTCGATCTCCTCTTTGCTC 29755 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || || || || || || || || || || | || || | | ||| || || Sbjct 29756 AGCCTGCCTTTGTCGTTGGTGATTGTGATTTTGTTCTCCTTCCCTGTGCTCTTGTCCACA 29815 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| ||||| | || ||||| ||||| | ||||| |||| | ||| ||||| Sbjct 29816 GCAGAGACATTGAGGATGCCATTAGCATCGATGTCGAATGTTACCTCAATCTGTGGGACT 29875 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || || || || | ||| || ||||| | ||||| | ||||| | |||| || | Sbjct 29876 CCTCTTGGGGCTGGTGGGATCCCCGTCAGGTCAAACTTGCCAAGGAGGTTGTTGTCTTTA 29935 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | | | | |||||||||| | || | || ||| | || || ||||| Sbjct 29936 GTCATGGCCCTTTCACCTTCAAACACCTGGATGAGCACACCTGGCTGGTTATCGGAGTAG 29995 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||||||| || || | || || || || || | | || | || |||| Sbjct 29996 GTGGAGAAGATTTGGGTTTGTTTGGTGGGGATGGTGGTGTTACGCTTGATCAACGCGGTC 30055 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | || || ||||| | || | |||||| || | || || | | | ||| Sbjct 30056 ATTACTCCTCCTGCTGTTTCAATGCCCAAAGACAGTGGAGCAACATCTAGCAAAAGGAGG 30115 Query 6989 TCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 || || ||| || || ||| | | ||| || || || |||| || || || Sbjct 30116 TCCTGGACATTCTCTGAGGTGTCCCCCATCAGGATAGCAGCCTGTACCGCAGCTCCATAG 30175 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108 || ||||| ||||| ||||| || |||| |||| || | || ||||| | ||| Sbjct 30176 GCCACCGCTTCATCTGGGTTGATGCTTTTGTTCAACTCCCTTCCATTAAAGAAGTCCTGC 30235 Query 7109 AACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACT 7168 | | || ||| ||||| || |||| || |||||||| |||| || || || || | Sbjct 30236 AGTAGTTTTTGGATTTTGGGAATTCTCGTGGATCCACCAACCAGGACTATGTCGTTGATC 30295 Query 7169 TTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGG 7228 || || || || ||||| | |||| | | | ||| || ||||| || | | | | Sbjct 30296 TTGGACTTGTCCATCTTGGCGTCTTGTAAAGCTTTCTCTACAGGGTCTAGCGTTCCCCTG 30355 Query 7229 AACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACG 7288 || | ||| ||||| ||||| | || || || || || || || ||||||| Sbjct 30356 AAGAGGTCTGAGTTGAGTTCTTCAAATCTAGCGCGAGTGATTGAGGTGTAAAAATCAATT 30415 Query 7289 CCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTT 7348 || || |||| || |||||||| ||| ||| ||| | | || |||| || | ||| Sbjct 30416 CCTTCATATAGAGAGTCAATTTCGATGCTTGCTTGGGTGCTGGATGATAGGGTCCTCTTG 30475 Query 7349 GCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTC 7408 ||||| ||||| |||||||| | | | | || | | ||| | ||| |||||| Sbjct 30476 GCGCGTTCACAAGCCGTTCGCAGCCTCCTCACTGCTCTCTTGTTTTGGCTAATGTCTTTC 30535 Query 7409 TTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCA 7468 || || || | |||||||| ||| ||||| | | | || || ||||| Sbjct 30536 TTGTGCTTTCTCTTAAACTCATCAACAAAGTGCTTCACCATACGATTGTCAAAGTCTTCT 30595 Query 7469 CCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTT 7528 || ||||||||||| || || || || ||||| |||||||| ||||| ||||||| | Sbjct 30596 CCGCCCAAGTGTGTGTCGCCGGCTGTGGCTTTCACTTCAAAAATACCATCTTCAATTGTC 30655 Query 7529 AACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCG 7588 | | || || ||||| || ||||||||||| ||||||||||| || || || | Sbjct 30656 AGGATGGATACGTCAAAAGTGCCACCACCCAGATCAAAAATGAGAACATTTCGCTCCCC- 30714 Query 7589 TCTTTGTTC-TTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 ||||| | | || || ||||| || || ||||| || || ||||||||||| || || | Sbjct 30715 TCTTTTTCCCTTGTCTAGACCATATGCAATAGCAGCTGCGGTTGGTTCATTGATGATTCT 30774 Query 7648 AAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGT 7706 || ||| |||||||||| |||| | | |||||||| || ||||| ||||| || |||| Sbjct 30775 CAGTACA-TTCAGGCCAGAAATAACTCCGGCATCTTTTGTGGCTTGGCGTTGGGAGTCGT 30833 Query 7707 TAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCG 7766 | || || || ||||| || | ||| || | | ||| |||| || | ||||| || | Sbjct 30834 TGAAATAAGCAGGGACTGTGATGACTGCATTGGACACTCTCTTCCCCAAATACGCCTCTG 30893 Query 7767 CGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCG 7826 | || || ||||| || | |||||| || || || ||||| | |||| || Sbjct 30894 CAATTTCCTTCATCTTAACCAAAACCATTGACGAGATTTCTTCTGGATAAAACGCCTTTA 30953 Query 7827 TTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAG-CACCGGGGATAACCTTA 7885 ||||||| || | || ||||| | |||| || || | | ||| ||| || || Sbjct 30954 TTTCACCTTTGTACTCCACTTCTACTTTGGGCTT-GCCACTGTCAC---TGATGACTTTG 31009 Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945 | | |||| ||||| || ||| || ||||| ||| ||||| ||||| || Sbjct 31010 AAAGGCCAAAGCTTCATGTCAGATTGCACGATATGGTCATCAAATTTTCTCCCGATGAGT 31069 Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 | ||| |||||||| | ||||| ||||||||||| ||||| || || ||||| Sbjct 31070 CTCTTGGCATCAAAGATGGTGTTAGCCGGGTTCATGGCCACCTGGTTTTTGGCTGCGTCA 31129 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 || || || || || | || || || || || || ||||| || || || || Sbjct 31130 CCAATTAGCCGCTC---GGTGTCAGTGAAGGCAACATAACTGGGGGTGGTGCGGTTGCCC 31186 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 |||||||| || || || || || | | | || ||||||| ||||| || || || Sbjct 31187 TGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACGCCCACGCAGGAGTAGGTG 31246 Query 8126 GTTCCTAAATCAATACCGAT 8145 || || | ||||| || || Sbjct 31247 GTGCCCAGGTCAATGCCAAT 31266 >seq44075 Length=47006 Score = 132 bits (146), Expect = 6e-26 Identities = 272/400 (68%), Gaps = 6/400 (2%) Strand=Plus/Minus Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACA 7242 |||||| ||| ||||| |||| || || |||| |||||||| ||||| | Sbjct 5244 CTTTGAATCTTTAAGTGCCGTTTCCACTGGCTCCAATGTCTTACGGAATAAGTCTGAATT 5185 Query 7243 CAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGA 7302 | |||||||| || || | ||| || || || ||||| |||| || || | | || Sbjct 5184 GATCTCCTCAAAGCGGGCTCTGGTGATCGAGGTGTAGAAGTCAATCCCCTCAAACAGAGA 5125 Query 7303 ATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGC 7362 ||||||||||||| ||| ||| | | ||||| || || ||||| || | |||||| || Sbjct 5124 ATCAATTTCAATGCTTGCTTGAGTGCTGGAAGACAAGGTGCGCTTGGCCCTCTCACAGGC 5065 Query 7363 CGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTT 7422 || || | ||||| | | | ||| || ||| || || ||||| || Sbjct 5064 TGTGCGAAGGCGACGCATTGACCTTTTGTTGGTTCTTATGTCTACTTTGTGCTTACGGTT 5005 Query 7423 AAACTCT-TCAGA--GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTG 7479 ||||| ||| | ||||| || | | | ||| |||||||||||||| || || Sbjct 5004 GAACTCAGTCATAAAGAAGT-TC--ACCATACGATTATCAAAATCTTCACCACCTAAATG 4948 Query 7480 TGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAAC 7539 |||||||| || || || || |||||||| |||||| | ||||| | | | || || Sbjct 4947 AGTATCCCCTGCTGTAGCCTTCACTTCAAAAATACCTTCGTCAATACTCAGAATGGAGAC 4888 Query 7540 ATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| || || || |||| ||||| ||||| || ||| Sbjct 4887 ATCAAATGTGCCGCCCCCCAAATCAAAGATGAGCACATTC 4848 >seq43642 Length=49772 Score = 100 bits (110), Expect = 4e-16 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 7607 CCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGC 7665 || || || || || || || ||||||||||| || ||||| || ||| ||||| ||||| Sbjct 33200 CCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATGATACGCAGCACA-TTCAGCCCAGC 33258 Query 7666 AATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGT 7725 ||||| | | |||||||| ||||| || || || || || || |||||||| ||||| || Sbjct 33259 AATAGCTCCAGCATCTTTGGTCGCCTGGCGCTGGGAGTCATTGAAGTAGGCAGGGACAGT 33318 Query 7726 TACGACCGC 7734 ||| || || Sbjct 33319 TACAACTGC 33327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634762342916080