Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11038 223 4e-53 seq15624 104 3e-17 seq19576 82.4 9e-11 >seq11038 Length=78219 Score = 223 bits (246), Expect = 4e-53 Identities = 885/1366 (65%), Gaps = 40/1366 (3%) Strand=Plus/Plus Query 105873 TGAGATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCA 105932 |||| || || | ||||| ||| |||||| ||||||||| | |||| ||| | Sbjct 22198 TGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTG 22257 Query 105933 GATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 105992 |||||||| | ||||||| ||| | | | ||||| || || | |||||||| |||| Sbjct 22258 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGG 22317 Query 105993 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTT 106052 ||||||| ||||| || |||| ||| |||||||| | | ||| | || || | Sbjct 22318 AGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCT 22377 Query 106053 CCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATATCAAATT 106109 |||| || | | |||||| || |||| || |||||| ||||||| ||| | | Sbjct 22378 CCTTAAGCAGCTTCCAGTCCCAG---AGCTCAGTGGGCACCTTTTCCCACATGTCATACT 22434 Query 106110 GAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAG 106169 | || | ||| | ||||| || |||||||||| | || | ||| | Sbjct 22435 GCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTG 22494 Query 106170 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 106229 |||| || ||||| |||||||||| || | || ||||| |||||||| | ||||| Sbjct 22495 CCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCA 22554 Query 106230 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 106289 | || ||||||| ||||||| || || | || || |||| || |||| Sbjct 22555 GCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGAC 22614 Query 106290 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 106346 | || ||||| | || || || ||||| ||| | || || || | | | ||| | Sbjct 22615 CCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATT---CTCTGCTTCAGGAA 22671 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGA 106403 | || || | || ||||||||| ||| || ||| | ||||| |||| |||| Sbjct 22672 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTT---ACAATTACTTTAGTGA 22728 Query 106404 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 106463 ||| |||| | ||||| ||||| || | | |||||| | || | Sbjct 22729 CCGAGGCAAGCTTTTTGAAGTCAAAGGTGCGT---TCCGGAGTAACATACATGTTGAGAG 22785 Query 106464 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 106523 | || || ||||| || || || ||| ||||| || ||| ||||| | ||| || | Sbjct 22786 CAATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAG 22845 Query 106524 TACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACG 106583 | |||||||| | || || || |||||||||| ||||||||||| |||| || | Sbjct 22846 TGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGG 22905 Query 106584 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCC 106643 |||| ||||| | |||||| || || || || || ||||| |||| || || || | || Sbjct 22906 CATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACC 22965 Query 106644 AC-ACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 106702 || || | | | || | || || || | | |||||| || || | |||||| Sbjct 22966 ACAACTGCTGAGCCTTGACCACCCGC-TTCACTCTACCCTCCTGTTCATATTGAGTGTAG 23024 Query 106703 AGGGCTTCAAACTCCT-CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGA 106760 || |||||||||| | |||| | | || | ||| | || | || || || | Sbjct 23025 AGCTTCTCAAACTCCTCCCCCCAACAC-TCATCCA-ACCCAGGGCACTCACTGGGGCACA 23082 Query 106761 AAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGG 106820 |||||||| | | || |||| ||||||||| || || || ||||| |||| Sbjct 23083 TCAGAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGG 23142 Query 106821 ATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGG 106879 | ||||| |||| || ||| || | ||| ||| || | | ||||||| Sbjct 23143 CATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTT-CTTCTTCAGCTCAAGG 23201 Query 106880 AACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---A 106936 || || | | ||| |||||||||||| || || | || | || ||| ||| | Sbjct 23202 AAGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTA 23261 Query 106937 CGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATA 106996 ||| |||| | || ||||| || ||| ||| | || | ||||| || | || Sbjct 23262 TTGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGG 23321 Query 106997 CCATCTGATTGACCATTTGTCCCCCGAATACGA-GATTTATTGGCTCTCACATCATGGAT 107055 |||| ||| | ||||||||| || ||| | | | || | ||| | | || | Sbjct 23322 CCATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTT-GATCTAATA-CAGCTAA 23379 Query 107056 GTGC-ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCAT 107114 ||| | ||||| || || || | || ||||| | ||||| | | || || ||| Sbjct 23380 CTGCTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCAT 23439 Query 107115 AGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC 107174 | || || | || ||| ||||| |||| | |||||||| ||||| | ||| |||| Sbjct 23440 AAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTC 23499 Query 107175 --TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 |||||| || || ||||| || || || | || ||| ||||| Sbjct 23500 TATTGGTG--CCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAAC 23543 >seq15624 Length=12484 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || |||||| |||| ||| || || |||| |||| || || || || Sbjct 11839 CTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCC 11898 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 | ||||| ||||| ||||| | ||||| ||||| |||||||||||||| || || || Sbjct 11899 TAGATTCTGCTGGTTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACC 11958 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA 106646 |||||| |||||||||| | ||| || | ||||| Sbjct 11959 CGTCTCTGTCTGTGACTCAATAATGGCATACCACA 11993 >seq19576 Length=429644 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 117293 CCTCATCTCGGGAAATAAGTTCATTTG-AGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||||||| | ||||||||||| | | ||| | || || ||||| ||||||| ||| Sbjct 417021 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTA-AGCCCAGGCATTAGACCCCTCTTT 416963 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 |||| ||||||||| ||| || || || |||||||| || ||||| ||| ||||| Sbjct 416962 TTCAGCCAATAAATGGCGGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAAT 416903 Query 117412 GC 117413 || Sbjct 416902 GC 416901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589636678948880