Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11038 414 1e-110 >seq11038 Length=78219 Score = 414 bits (458), Expect = 1e-110 Identities = 1017/1540 (66%), Gaps = 43/1540 (3%) Strand=Plus/Plus Query 47310 AGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTT 47369 ||||| || || ||||| ||||| |||||||| || |||||||| | || || || || Sbjct 22212 AGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTGTGTAGATGTTGCTG 22271 Query 47370 GTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATG 47429 || || | ||| || || ||||| || || | ||||| || || || ||||| |||||| Sbjct 22272 GTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAGGCTGTGGGCATG 22331 Query 47430 GATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTC 47489 | || | || | || ||||| || || | ||| |||| | ||| Sbjct 22332 GGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTCCTTAAGCAGCTTC 22391 Query 47490 CAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTT 47549 || ||||| || || | || || | ||| | ||||| || ||||| ||| |||| Sbjct 22392 CAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATACTGCAGAATGCCTCTACTC 22451 Query 47550 ATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCT 47609 | ||||| || ||||| | |||||| || | | || || | || || ||||| Sbjct 22452 ACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTGCCAACTCCCAGCTTGCC 22511 Query 47610 TCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGAT 47669 |||| ||| ||| || || || ||||| || | || || || | ||||| | Sbjct 22512 TCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAGCTGGGCTTCAGGG 22571 Query 47670 GATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCA 47729 |||||| ||||| || | |||||| | || || |||||||| || Sbjct 22572 CTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTGCACACCAATCCCG 22631 Query 47730 ATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCT 47789 ||||| || || || || ||| ||| ||||| || | ||| || | ||| || || Sbjct 22632 ATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTGGGTAGTAGTTAATGTCA 22691 Query 47790 ATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAAT------------ 47837 || || || || || |||||| || ||| | Sbjct 22692 ATGATCTTGTTGAG------------GTTTCTTACAATTACT-TTAGTGACCGAGGCAAG 22738 Query 47838 -TTATTAAAATCAAACTTG--TTATTTA-TAACAAACCTATTAAGTGCTATAGATGCTAG 47893 || || || ||||| || || | ||||| || | || || || || || || | Sbjct 22739 CTTTTTGAAGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGCAATGGAGGCCAA 22798 Query 47894 ATTACATACAGCTACCTCAT-TTGGATTAGTATATTGTATTATTTCAGCACATAGATTAC 47952 ||||| || || || |||| || | || ||||| | | || |||| || | |||| Sbjct 22799 GTTACAGACGGCCACTTCATCTTTGCTT-GTATACTCCACAATCTCAGTGCACAAGTTAC 22857 Query 47953 CACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAA 48012 |||||||| || |||||||| || || ||| | ||||||| || || ||||| | Sbjct 22858 TGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTTTGTACA 22917 Query 48013 GCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCT-A 48071 ||| |||||||||| |||||| ||||||| || ||||| | | ||| | | | || | Sbjct 22918 ACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACCACA-ACTGCTGA 22976 Query 48072 GCCTTTATAACA-GCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAA 48130 ||||| | || ||| | || || || ||||| |||| ||| || | ||||||||| Sbjct 22977 GCCTTGACCACCCGCTTCA-CTCTACCCTCCTGTTCATATTGAGTGTAGAGCTTCTCAAA 23035 Query 48131 TTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAGGACACATCAATGACCAAT 48189 || ||||| | ||| | ||| |||||||| || ||| | || ||||||| ||||| | Sbjct 23036 CTCCTCCCCCCA-ACACTCATCCAACCCAGGGCACTCACTGGGGCACATCAGAGACCAGT 23094 Query 48190 CCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATA-AATAAA 48248 ||| | |||| || || |||| || | ||| || ||||| || || ||| || | Sbjct 23095 CCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGC-ATAGAAGAGG 23153 Query 48249 TCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATA 48308 || | | || | || || || ||| | ||| | || || ||||| ||||| | | | Sbjct 23154 TCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGAAGTCAAACACA 23213 Query 48309 TCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGA 48368 ||| |||||||| || | ||||| || | |||| ||||||||||| || ||||| Sbjct 23214 TCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTATTGCCACCTTGG 23273 Query 48369 TCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATA 48428 || | || | || || ||||| || ||||| | ||| || |||| |||||||| || Sbjct 23274 TCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGCCATTTGAGTTA 23333 Query 48429 CCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATA 48488 ||||| ||||| | ||| ||||| || | | ||| ||| |||| || | ||| || Sbjct 23334 CCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAACTGCTACACCAATC 23393 Query 48489 CCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATA 48548 || ||||| |||||| || |||||||| |||| || ||||||||||| || || || Sbjct 23394 CCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAATGCCATCAATG 23453 Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 || ||||| |||| | || || || || || | || || | || |||| Sbjct 23454 CTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTATTGGTGCCTGCG 23513 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 || || | || ||||| |||||| | ||||| ||||| || | || || || || ||| Sbjct 23514 TTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCA 23573 Query 48669 ATAACAGAATCTATATCCCATTGATGT--ATACCTATAGATACACGCATTAACATATATT 48726 || | | |||||||| || || ||| || || | || ||| | ||| | ||| | | Sbjct 23574 ATGGCTGCATCTATAT--CAGTGTTGTGGATTCCAACAGCTACTCTCATGAGCATGTGCT 23631 Query 48727 GAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAA 48786 | || | ||| | | ||| ||| ||||||| || || || || ||||| |||| Sbjct 23632 GTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTCTAATGTCTTAA 23691 Query 48787 AACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 | ||||| | ||||| ||||| || |||||| ||| || Sbjct 23692 AGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTAT 23731 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||| || ||||| || || ||||| ||| | || |||| ||||||||||| Sbjct 21872 TCCAACCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 21931 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || || || ||||| | ||||| | || || ||||| | | | | | Sbjct 21932 TTAGGGACTGGCTTTGGTCAATGTAAGCACCGCGGTCGGCAGCCATCTTGAGTACAGTCT 21991 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | |||| ||| ||||| || |||||||| | ||||| | || ||||||| Sbjct 21992 TCTGTGATATTTCCCAAACAGTTTTATACAACTGTTTTAAATCATCTGGGA 22042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561780935989680