Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014-
12-02] 46,662 sequences; 679,761,122 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq43552 156 3e-32
seq43642 114 1e-19
seq44075 109 4e-18
seq27510 100 2e-15
>seq43552
Length=261649
Score = 156 bits (172), Expect = 3e-32
Identities = 336/497 (68%), Gaps = 8/497 (2%)
Strand=Plus/Minus
Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103
|||| ||||| || || || ||||| || || || ||| | || || || |||||||
Sbjct 31217 ATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGTTATGTTG 31158
Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTA 550160
| ||||| || || || | || ||||||| ||||| ||| | || | ||| || |
Sbjct 31157 CCTTCACTGACACCGAGCGGCTAATTGGTGACGCAGCCAAAAACCAGGTGGCCA-TG--A 31101
Query 550161 ATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGA 550220
| || | || || || |||||||| || | | || || |||| ||| |||| |
Sbjct 31100 ACCCGGCTAACACCATCTTTGATGCCAAGAGACTCATCGGGAGAAAATTTGATGACCATA 31041
Query 550221 CTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTT 550280
|| || | || ||||||| |||||||||| || | | | || ||| || ||
Sbjct 31040 TCGTGCAATCTGACATGAAGCTTTGGCCTTTCAAAGTCATCAGTGACAGTGGCAAGCCCA 30981
Query 550281 ATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTA 550340
| | |||| | |||| | || |||| |||||| |||| || || |
Sbjct 30980 AAGTAGAAGTGGAGTACAAAGGTGAAATAAAGGCGTTTTATCCAGAAGAAATCTCGTCAA 30921
Query 550341 TGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGAT 550399
||||||| | || ||||| ||| || || | | |||| |||| ||| | ||
Sbjct 30920 TGGTTTTGGTTAAGATGAAGGAAATTGCAGAGGCGTAT-TTGGGGAAGAGAGTGTCCAAT 30862
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
||||| || || || || || ||||| || ||||| ||||| ||||| || ||||||||
Sbjct 30861 GCAGTCATCACAGTCCCTGCTTATTTCAACGACTCCCAACGCCAAGCCACAAAAGATGCC 30802
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519
||| |||| |||| || ||||| || | || ||||||||||| || || ||||| ||
Sbjct 30801 GGAGTTATTTCTGGCCTGAATGTACTGAGAATCATCAATGAACCAACCGCAGCTGCTATT 30742
Query 550520 GCATATGGACTTGATAA 550536
|||||||| || || ||
Sbjct 30741 GCATATGGTCTAGACAA 30725
Score = 141 bits (156), Expect = 7e-28
Identities = 445/683 (65%), Gaps = 6/683 (1%)
Strand=Plus/Minus
Query 551911 GAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAG 551970
|||| ||||| ||| | ||||| | | || ||||| | || ||| | | || |||
Sbjct 30494 GAACGGCTTGTGAACGCGCCAAGAGGACCCTATCATCCAGCACCCAAGCAAGCATCGAAA 30435
Query 551971 TAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAG 552030
| || || ||| ||| |||||||||| | | || | || | | || | ||||||||
Sbjct 30434 TTGACTCTCTATATGAAGGAATTGATTTTTACACCTCAATCACTCGCGCTAGATTTGAAG 30375
Query 552031 ATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATT 552090
| | || || ||||| || ||| | || || ||||| ||| |||| |||
Sbjct 30374 AACTCAACTCAGACCTCTTCAGGGGAACGCTAGACCCTGTAGAGAAAGCTTTACAAGACG 30315
Query 552091 CAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTC 552150
| ||||| || || ||||| | | || || || || ||||||||||| || |||||||
Sbjct 30314 CCAAGATGGACAAGTCCAAGATCAACGACATAGTCCTGGTTGGTGGATCCACGAGAATTC 30255
Query 552151 CTAAAATTCGCGAAAT-GTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTT 552209
| ||||| | || | | || ||| ||| ||||| | | || || |||| |
Sbjct 30254 CCAAAATCCAAAAACTACTGCAGGACTTCTTT-AATGGAAGGGAGTTGAACAAAAGCATC 30196
Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT--TTCTGGAC 552267
|| |||||||| || || |||||||| || || | || || ||||| || | ||||
Sbjct 30195 AACCCAGATGAAGCGGTGGCCTATGGAGCTGCGGTACAGGCTGCTATCCTGATGGGGGAC 30136
Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327
| || | || || | || | | | | |||||||| |||| || ||| | ||
Sbjct 30135 -ACCTCA-GAGAATGTCCAGGACCTCCTTTTGCTAGATGTTGCTCCACTGTCTTTGGGCA 30078
Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387
| ||||||| ||||| | ||||| | ||| | | || || || || || |
Sbjct 30077 TTGAAACAGCAGGAGGAGTAATGACCGCGTTGATCAAGCGTAACACCACCATCCCCACCA 30018
Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447
|| || | | | || || || || || ||||| || | | ||| || || | |
Sbjct 30017 AACAAACCCAAATCTTCTCCACCTACTCCGATAACCAGCCAGGTGTGCTCATCCAGGTGT 29958
Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507
||||||| ||||| | |||||||| || || | ||||| | ||| | | |
Sbjct 29957 TTGAAGGTGAAAGGGCCATGACTAAAGACAACAACCTCCTTGGCAAGTTTGACCTGACGG 29898
Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567
| || || || || || | ||||| || || ||||| || || ||||| |||||||| |
Sbjct 29897 GGATCCCACCAGCCCCAAGAGGAGTCCCACAGATTGAGGTAACATTCGACATCGATGCTA 29838
Query 552568 ATGGAATTTTGAATGTGACTGCT 552590
|||| || | ||||| |||||
Sbjct 29837 ATGGCATCCTCAATGTCTCTGCT 29815
>seq43642
Length=49772
Score = 114 bits (126), Expect = 1e-19
Identities = 107/135 (79%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
||||||| ||||||| || || || || |||||||| || || || || || |||||||
Sbjct 33329 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCGACCAAAGATG 33270
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| ||||||||| || ||||| || ||||| ||||||||||| || || || ||
Sbjct 33269 CTGGAGCTATTGCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACAGCAGCAGCCA 33210
Query 550518 TTGCATATGGACTTG 550532
|||| ||||| ||||
Sbjct 33209 TTGCCTATGG-CTTG 33196
>seq44075
Length=47006
Score = 109 bits (120), Expect = 4e-18
Identities = 102/130 (78%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | ||||| ||||| || || ||||| || || ||||| ||||| |||||||
Sbjct 4610 ATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGTCAGGCTACAAAAGATG 4669
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| ||| ||| ||| |||||||||||||| ||||||||||| || || ||||||||
Sbjct 4670 CAGGAGTCATTTGTGGTCTTAATGTTCTTCGCATTATCAATGAGCCAACAGCTGCTGCTA 4729
Query 550518 TTGCATATGG 550527
|||| || ||
Sbjct 4730 TTGCTTACGG 4739
>seq27510
Length=34911
Score = 100 bits (110), Expect = 2e-15
Identities = 157/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Plus
Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311
|| ||||| || || | || ||||| ||| | ||| || ||||| |||| ||||
Sbjct 30142 CTCAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGAG 30199
Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371
| | |||||| ||||| || || |||||||| || || ||||| |||||||| || |
Sbjct 30200 TGCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATAC 30259
Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431
|||| |||||||| || || || || |||||||| ||| | | | ||| |
Sbjct 30260 CTTCCTTATCTTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCA 30319
Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474
||| | ||||||||||| || || ||||| || || |||||
Sbjct 30320 AAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCAT 30362
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4026828302994380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |