Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq43552 156 3e-32 seq43642 114 1e-19 seq44075 109 4e-18 seq27510 100 2e-15 >seq43552 Length=261649 Score = 156 bits (172), Expect = 3e-32 Identities = 336/497 (68%), Gaps = 8/497 (2%) Strand=Plus/Minus Query 550044 ATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTT 550103 |||| ||||| || || || ||||| || || || ||| | || || || ||||||| Sbjct 31217 ATGGCAAAGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGTTATGTTG 31158 Query 550104 CTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTA 550160 | ||||| || || || | || ||||||| ||||| ||| | || | ||| || | Sbjct 31157 CCTTCACTGACACCGAGCGGCTAATTGGTGACGCAGCCAAAAACCAGGTGGCCA-TG--A 31101 Query 550161 ATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGA 550220 | || | || || || |||||||| || | | || || |||| ||| |||| | Sbjct 31100 ACCCGGCTAACACCATCTTTGATGCCAAGAGACTCATCGGGAGAAAATTTGATGACCATA 31041 Query 550221 CTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTT 550280 || || | || ||||||| |||||||||| || | | | || ||| || || Sbjct 31040 TCGTGCAATCTGACATGAAGCTTTGGCCTTTCAAAGTCATCAGTGACAGTGGCAAGCCCA 30981 Query 550281 ATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTA 550340 | | |||| | |||| | || |||| |||||| |||| || || | Sbjct 30980 AAGTAGAAGTGGAGTACAAAGGTGAAATAAAGGCGTTTTATCCAGAAGAAATCTCGTCAA 30921 Query 550341 TGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGAT 550399 ||||||| | || ||||| ||| || || | | |||| |||| ||| | || Sbjct 30920 TGGTTTTGGTTAAGATGAAGGAAATTGCAGAGGCGTAT-TTGGGGAAGAGAGTGTCCAAT 30862 Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 ||||| || || || || || ||||| || ||||| ||||| ||||| || |||||||| Sbjct 30861 GCAGTCATCACAGTCCCTGCTTATTTCAACGACTCCCAACGCCAAGCCACAAAAGATGCC 30802 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| |||| |||| || ||||| || | || ||||||||||| || || ||||| || Sbjct 30801 GGAGTTATTTCTGGCCTGAATGTACTGAGAATCATCAATGAACCAACCGCAGCTGCTATT 30742 Query 550520 GCATATGGACTTGATAA 550536 |||||||| || || || Sbjct 30741 GCATATGGTCTAGACAA 30725 Score = 141 bits (156), Expect = 7e-28 Identities = 445/683 (65%), Gaps = 6/683 (1%) Strand=Plus/Minus Query 551911 GAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAG 551970 |||| ||||| ||| | ||||| | | || ||||| | || ||| | | || ||| Sbjct 30494 GAACGGCTTGTGAACGCGCCAAGAGGACCCTATCATCCAGCACCCAAGCAAGCATCGAAA 30435 Query 551971 TAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAG 552030 | || || ||| ||| |||||||||| | | || | || | | || | |||||||| Sbjct 30434 TTGACTCTCTATATGAAGGAATTGATTTTTACACCTCAATCACTCGCGCTAGATTTGAAG 30375 Query 552031 ATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATT 552090 | | || || ||||| || ||| | || || ||||| ||| |||| ||| Sbjct 30374 AACTCAACTCAGACCTCTTCAGGGGAACGCTAGACCCTGTAGAGAAAGCTTTACAAGACG 30315 Query 552091 CAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTC 552150 | ||||| || || ||||| | | || || || || ||||||||||| || ||||||| Sbjct 30314 CCAAGATGGACAAGTCCAAGATCAACGACATAGTCCTGGTTGGTGGATCCACGAGAATTC 30255 Query 552151 CTAAAATTCGCGAAAT-GTTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTT 552209 | ||||| | || | | || ||| ||| ||||| | | || || |||| | Sbjct 30254 CCAAAATCCAAAAACTACTGCAGGACTTCTTT-AATGGAAGGGAGTTGAACAAAAGCATC 30196 Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT--TTCTGGAC 552267 || |||||||| || || |||||||| || || | || || ||||| || | |||| Sbjct 30195 AACCCAGATGAAGCGGTGGCCTATGGAGCTGCGGTACAGGCTGCTATCCTGATGGGGGAC 30136 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 | || | || || | || | | | | |||||||| |||| || ||| | || Sbjct 30135 -ACCTCA-GAGAATGTCCAGGACCTCCTTTTGCTAGATGTTGCTCCACTGTCTTTGGGCA 30078 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | ||||||| ||||| | ||||| | ||| | | || || || || || | Sbjct 30077 TTGAAACAGCAGGAGGAGTAATGACCGCGTTGATCAAGCGTAACACCACCATCCCCACCA 30018 Query 552388 AAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTT 552447 || || | | | || || || || || ||||| || | | ||| || || | | Sbjct 30017 AACAAACCCAAATCTTCTCCACCTACTCCGATAACCAGCCAGGTGTGCTCATCCAGGTGT 29958 Query 552448 TTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAG 552507 ||||||| ||||| | |||||||| || || | ||||| | ||| | | | Sbjct 29957 TTGAAGGTGAAAGGGCCATGACTAAAGACAACAACCTCCTTGGCAAGTTTGACCTGACGG 29898 Query 552508 GTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCA 552567 | || || || || || | ||||| || || ||||| || || ||||| |||||||| | Sbjct 29897 GGATCCCACCAGCCCCAAGAGGAGTCCCACAGATTGAGGTAACATTCGACATCGATGCTA 29838 Query 552568 ATGGAATTTTGAATGTGACTGCT 552590 |||| || | ||||| ||||| Sbjct 29837 ATGGCATCCTCAATGTCTCTGCT 29815 >seq43642 Length=49772 Score = 114 bits (126), Expect = 1e-19 Identities = 107/135 (79%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| ||||||| || || || || |||||||| || || || || || ||||||| Sbjct 33329 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCGACCAAAGATG 33270 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||||||| || ||||| || ||||| ||||||||||| || || || || Sbjct 33269 CTGGAGCTATTGCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACAGCAGCAGCCA 33210 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 33209 TTGCCTATGG-CTTG 33196 >seq44075 Length=47006 Score = 109 bits (120), Expect = 4e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | ||||| ||||| || || ||||| || || ||||| ||||| ||||||| Sbjct 4610 ATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGTCAGGCTACAAAAGATG 4669 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | ||| ||| ||| |||||||||||||| ||||||||||| || || |||||||| Sbjct 4670 CAGGAGTCATTTGTGGTCTTAATGTTCTTCGCATTATCAATGAGCCAACAGCTGCTGCTA 4729 Query 550518 TTGCATATGG 550527 |||| || || Sbjct 4730 TTGCTTACGG 4739 >seq27510 Length=34911 Score = 100 bits (110), Expect = 2e-15 Identities = 157/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || ||||| || || | || ||||| ||| | ||| || ||||| |||| |||| Sbjct 30142 CTCAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGG--ATGTTGTAGTCAGAGAGAG 30199 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| ||||| || || |||||||| || || ||||| |||||||| || | Sbjct 30200 TGCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATAC 30259 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGA 563431 |||| |||||||| || || || || |||||||| ||| | | | ||| | Sbjct 30260 CTTCCTTATCTTGGATCTTGGCCTTCACGTTTTCAATTGTGTCACTCGGCTCAACTTCCA 30319 Query 563432 GAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | ||||||||||| || || ||||| || || ||||| Sbjct 30320 AAGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTGCAT 30362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026828302994380