Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq10050 136 3e-27 seq11547 111 1e-19 >seq10050 Length=29434 Score = 136 bits (150), Expect = 3e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||||||| || || || || |||||||| || || || || Sbjct 22569 TAGTCCTGTGATGTGGGCGATCATGTATGTTAGAAGTGAATAGCTGGCAATATTGAAAGG 22510 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 29987 ||| || ||||||||||| || || | ||| || |||||||| || ||||| || |||| Sbjct 22509 TACTCCCAGCCCCATGTCACCAGAGCGCTGATAAAGCTGACAGGACAGCTCACCATCGCA 22450 Query 29988 CACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||| || |||||||| | | |||||| || || ||||||||||| Sbjct 22449 CACATAGAACTGACAAAGAGCGTGGCATGGGGGCAGAGCCATGAG 22405 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| ||||||||||| || || || |||||||| || || || || || || ||||| Sbjct 22027 CATGTTTGTGTACTCTGCCCCAAAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTC 21968 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 |||||| || | || || || | ||||||| || || | || || |||||||| Sbjct 21967 TCCCTCCTCTCGGTTAGTAAATCCATTGTTGTCCAGGAACTCACGAGAGCCATTGGCGTC 21908 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30303 ||| ||||| ||||| || | |||||||||||| Sbjct 21907 CCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTG 21874 >seq11547 Length=21244 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 || |||| ||| || |||||||| || | || | ||||| || || | || ||||| Sbjct 14641 CCTGTGATGTGGGCGATCATGTATGTTACAAGTGCATAGCTAGCAATACTGAAAGGTACT 14582 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 29991 || ||||||||||| || || | ||| | |||||||| || ||||| || |||||||| Sbjct 14581 CCCAGCCCCATGTCACCAGAGCGCTGATTAAGCTGACAGGACAGCTCACCATCGCTCACA 14522 Query 29992 TAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || |||||||| | | ||||| || || ||||||||||| Sbjct 14521 TAGAACTGACAAAGAGCCTGGCATGGGGGCAGAGCCATGAG 14481 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 30172 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30231 || || |||||||| || || || || || || ||||||||||| || | || || Sbjct 14257 AAGTGTCTCCACTGAAAGCCATAGACAGGCCCAAGGTCTCCCTCCTCTCAGTTAGTAAAT 14198 Query 30232 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30291 || | ||||||| ||||| | || || |||||||||| ||||| ||||| || | Sbjct 14197 CCACCATTGTCCAGGAAGTCACGAGAGCCACTGGCGTCCCAAATCTTCACCCCTTTTGCA 14138 Query 30292 GAGAGCTCTTTGG 30304 ||||||||||||| Sbjct 14137 GAGAGCTCTTTGG 14125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408385221980126