Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq43552 187 2e-41 seq44075 114 8e-20 seq27510 100 2e-15 seq43642 96.9 2e-14 >seq43552 Length=261649 Score = 187 bits (206), Expect = 2e-41 Identities = 374/547 (68%), Gaps = 8/547 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| ||||| | || || || ||| || || | || | || |||| ||||| Sbjct 31266 ATTGGCATTGACCTGGGCACCACCTACTCCTGCGTGGGCGTCTTCCAGCATGGCAAAGTG 31207 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || || ||||| ||||| || || | || || || |||||| | || ||||| Sbjct 31206 GAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGTTATGTTGCCTTCACTGAC 31147 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | || ||||| || || || ||| | || | || || || | ||| || Sbjct 31146 ACCGAGCGGCTAATTGGTGACGCAGCCAAAAACCAGGTGGCCATGAACCCGGCTAACACC 31087 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 || |||||||| || ||| | || || | || |||||||| | || |||||||| Sbjct 31086 ATCTTTGATGCCAAGAGACTCATCGGGAGAAAATTTGATGACCATATCGTGCAATCTGAC 31027 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| | ||||||||| || || || | || |||| || || | |||||| | Sbjct 31026 ATGAAGCTTTGGCCTTTCAAAGTCATCAGTGACAGTGGCAAGCCCAAAGTAGAAGTGGAG 30967 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 |||| |||||||| || |||| || ||| |||| || ||||||||||| | | Sbjct 30966 TACAA--AGGTGAAATAAAGGCGTTTTATCCAGAAGAAATCTCGTCAATGGTTTTGGTTA 30909 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTAC 474747 | ||||| ||| || ||| | ||| |||| |||| ||| | ||||||| || || Sbjct 30908 AGATGAAGGAAATTGCAGAG-GCGTAT-TTGGGGAAGAGAGTGTCCAATGCAGTCATCAC 30851 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 || || || ||||| || || || ||||| ||||| || |||||||| ||| ||| | Sbjct 30850 AGTCCCTGCTTATTTCAACGACTCCCAACGCCAAGCCACAAAAGATGCCGGAGTTATTTC 30791 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 || || ||||| | | || || ||||||||||| ||||| || |||| |||||||| Sbjct 30790 TGGCCTGAATGTACTGAGAATCATCAATGAACCAACCGCAGCTGCTATTGCATATGGTCT 30731 Query 474868 TGATAAG 474874 || ||| Sbjct 30730 AGACAAG 30724 Score = 163 bits (180), Expect = 2e-34 Identities = 566/871 (65%), Gaps = 14/871 (2%) Strand=Plus/Minus Query 475310 GGAACTCATGACGTAACTTTACTATCACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACA 475369 || ||| ||||||| | | || || | ||||||||| |||| || | ||| ||| Sbjct 30678 GGCACTTTTGACGTATCCATCCTGACAATTGAAGATGGTATTTTTGAAGTGAAAGCCACA 30619 Query 475370 GCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCATGGTGTG 475427 || || || |||| | || || ||||| ||||| ||| | | || | || | || Sbjct 30618 GCCGGCGACACACACTTGGGCGGAGAAGACTTTGACAATCGTATGGTGAAGCAC--TTTG 30561 Query 475428 TTGAAGATTTCAAGAGGAAAAATAAAGTTGATCTTT--CAACATCTGCTAAAGCATTAAG 475485 |||| || || ||||| || | || || || ||| | | | |||| | || Sbjct 30560 TTGATGAGTTTAAGAGAAAGCACAAGAAAGACATTAGCCAAAACAAG--AGAGCAGTGAG 30503 Query 475486 ACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTAC 475545 | || |||| ||||||||||| || ||| | | || || || || ||| | | Sbjct 30502 GAGGCTGCGAACGGCTTGTGAACGCGCCAAGAGGACCCTATCATCCAGCACCCAAGCAAG 30443 Query 475546 TGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAA 475605 | ||| |||| ||||| | |||||||||||||| | | || || || | |||| Sbjct 30442 CATCGAAATTGACTCTCTATATGAAGGAATTGATTTTTACACCTCAATCACTCGCGCTAG 30383 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 ||||||||| | || || ||||| || ||| | || || || || ||| | | Sbjct 30382 ATTTGAAGAACTCAACTCAGACCTCTTCAGGGGAACGCTAGACCCTGTAGAGAAAGCTTT 30323 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAA 475724 ||| | || | ||||| || |||| || | || || || || || || || || | Sbjct 30322 ACAAGACGCCAAGATGGACAAGTC-CAAGATCAACGACATAGTCCTGGTTGGTGGATCCA 30264 Query 475725 CAAGAATTCCAAAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAAT 475783 | |||||||| ||||| | || | || || | | |||||||| | |||| || Sbjct 30263 CGAGAATTCCCAAAATCCAAAAACTACTG-CAGGACTTCTTTAATGGAAGGGAGTTGAAC 30205 Query 475784 GAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTT- 475842 |||| | || || |||||||| || || ||||||||||| || || || ||||| | Sbjct 30204 AAAAGCATCAACCCAGATGAAGCGGTGGCCTATGGAGCTGCGGTACAGGCTGCTATCCTG 30145 Query 475843 ATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTC 475902 || || | | | ||||| | | | | | | | || || ||||||| || Sbjct 30144 ATGGGGGACACCTCA-GAGAATGTCCAGGACCTCCTTTTGCTAGATGTTGCTCCACTGTC 30086 Query 475903 ATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTAT 475962 || || ||||||||| ||||| | ||||| | || | | || || | || Sbjct 30085 TTTGGGCATTGAAACAGCAGGAGGAGTAATGACCGCGTTGATCAAGCGTAACACCACCAT 30026 Query 475963 CCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCAT 476022 ||| |||| || | || | || ||||| || || ||||| || || ||| ||| Sbjct 30025 CCCCACCAAACAAACCCAAATCTTCTCCACCTACTCCGATAACCAGCCAGGTGTGCTCAT 29966 Query 476023 CCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAA 476082 ||| | |||||||||||||| | |||||||| || ||| ||||| | ||| | Sbjct 29965 CCAGGTGTTTGAAGGTGAAAGGGCCATGACTAAAGACAACAACCTCCTTGGCAAGTTTGA 29906 Query 476083 TCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATAT 476142 || || || || || || || |||||||| || || ||||| || || || || || Sbjct 29905 CCTGACGGGGATCCCACCAGCCCCAAGAGGAGTCCCACAGATTGAGGTAACATTCGACAT 29846 Query 476143 TGATGCAAATGGTATTCTTAATGTTACTGCT 476173 ||||| ||||| || || ||||| ||||| Sbjct 29845 CGATGCTAATGGCATCCTCAATGTCTCTGCT 29815 Score = 93.3 bits (102), Expect = 3e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 290825 AGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCT 290884 |||||||||| | | |||||| ||||||||||| || ||||| | ||||| || || Sbjct 30731 AGACCATATGCAATAGCAGCTGCGGTTGGTTCATTGATGATTCTCAGTACATTCAGGCCA 30790 Query 290885 GCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACT 290944 | ||| | | | |||| || || |||||||| | || || ||||||||||||||| Sbjct 30791 GAAATAACTCCGGCATCTTTTGTGGCTTGGCGTTGGGAGTCGTTGAAATAAGCAGGGACT 30850 Query 290945 GTAATAACAGCTTTTTCCACTTTCTTTTTCAAATAATTTTCTGCCATTT 290993 || || || || || |||| |||| |||||| ||||| |||| Sbjct 30851 GTGATGACTGCATTGGACACTCTCTTCCCCAAATACGCCTCTGCAATTT 30899 >seq44075 Length=47006 Score = 114 bits (126), Expect = 8e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 474726 AAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAA 474785 |||||| | |||| || | ||||| ||||| || || ||||||||||| ||||| || | Sbjct 4601 AAGTAAATAATGCTGTTGTGACTGTGCCAGCCTACTTCAATGATTCTCAGCGTCAGGCTA 4660 Query 474786 CTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAG 474845 | |||||||| ||| ||| |||||||||||| | || ||||| ||||| ||||||| Sbjct 4661 CAAAAGATGCAGGAGTCATTTGTGGTCTTAATGTTCTTCGCATTATCAATGAGCCAACAG 4720 Query 474846 CAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || || ||||||| || | || ||||| Sbjct 4721 CTGCTGCTATTGCTTACGGCTTAGACAAGAA 4751 >seq27510 Length=34911 Score = 100 bits (110), Expect = 2e-15 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| ||||| | | |||||| |||||||| ||||||||||| || | || Sbjct 30184 TTGTAGTCAGAGAGAGTGCGGCCATCTTCTAGTTGCTTACCAGCAAAAATCAGCCTCTGC 30243 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || |||||||| || |||||||| ||||| ||||| || || |||||| || ||| Sbjct 30244 TGGTCAGGAGGGATACCTTCCTTATCTTGGATCTTGGCCTTCACGTTTTCAATTGTGTCA 30303 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | || || ||| || || |||||||| || || |||||||| || || || Sbjct 30304 CTCGGCTCAACTTCCAA-AGTGATGGTTTTACCAGTCAGGGTCTTAACAAAGATCTG 30359 >seq43642 Length=49772 Score = 96.9 bits (106), Expect = 2e-14 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 |||||||| || |||| || |||| ||| | || ||||| || |||||||| ||| Sbjct 32184 ACTAAAGACAACAACATCCTGGGAAAGTTTGAGCTCACTGGTATCCCGCCTGCTCCAAGA 32125 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 || || || || |||||||| || ||||| |||||||| |||||||||||||| || Sbjct 32124 GGTGTCCCCCAGATTGAAGTCACCTTTGACATTGATGCCAATGGTATTCTTAACGT 32069 Score = 96.9 bits (106), Expect = 2e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| | ||||| || || || || ||||| || || || || || || ||||||| Sbjct 33329 ATGCAGTTGTAACTGTCCCTGCCTACTTCAATGACTCCCAGCGCCAGGCGACCAAAGATG 33270 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | ||| ||||| || || ||||| | ||||| || ||||||||||||||||| || Sbjct 33269 CTGGAGCTATTGCTGGGCTGAATGTGCTGCGTATCATCAATGAACCAACAGCAGCAGCCA 33210 Query 474855 TTGCTTATGGTCTTG 474869 |||| ||||| |||| Sbjct 33209 TTGCCTATGG-CTTG 33196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266177640415976