Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq11038 250 3e-61 seq19576 82.4 9e-11 >seq11038 Length=78219 Score = 250 bits (276), Expect = 3e-61 Identities = 949/1460 (65%), Gaps = 42/1460 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||||||| ||||| ||||| | || || | || |||||| || || ||| | | Sbjct 23636 CCCACAGCACATGCTCATGAGAGTAGCTGTTGGAATCCACAACACTGATATAGATGCAGC 23577 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| ||| || | |||| | | || ||||| ||| || | || || || | Sbjct 23576 CATTGAGACCTACAACCTGCTGTCTGAGAAGTG-GTTCACTCATGCCTCTCCCACTCTGT 23518 Query 75330 TCAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 |||| || || |||||| |||| ||| | ||||| |||||||| | |||| ||||| Sbjct 23517 TCAACGCAGG--CACCAATAGACCCCAGCTCTCCAGCTGCTTCCTGCTGGCCATGAAGGA 23460 Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447 ||| || | || || |||| || || | | ||||| | ||||| || | || Sbjct 23459 TGACAGCATTGATGGCATTTATGATACACTCAAACAATGTGCTCTCATCTCTAAATCTGC 23400 Query 75448 TGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATC-TCGTATTCGGGGG 75505 || || ||||| | ||| | || | | ||| | || | | | ||| || Sbjct 23399 AGGAGGGATTGGTGTAGCAGTTAGCTG-TATTAGATC-AACAGGTAGTTACATTGCTGGA 23342 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 ||||||||| | ||| |||| || | || ||||| | || | ||| ||| || ||| Sbjct 23341 ACAAATGGTAACTCAAATGGCCTTGTGCCGATGCTGAGAGTGTACAACAACACCGCACGC 23282 Query 75566 TATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGG 75622 || || | |||| || | || ||| | | || | ||| |||| |||||| Sbjct 23281 TACGTGGACCAAGGTGGCAATAAACGACCGGGTGCTTTTGCCATATACCTGGAGCCATGG 23222 Query 75623 CATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 || ||| | | || ||||||||| | | || ||| ||| | || ||| | Sbjct 23221 CACTTTGATGTGTTTGACTTCCTTGAGCTGAAGAAG-AACACTGGTAAAGAGGAGCAGAG 23163 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | |||| ||||| | |||| ||||| || || || ||||||||| |||| || | Sbjct 23162 GGCACGAGACCTCTTCTATGCCCTATGGATCCCTGATCTGTTCATGAAGAGGGTGGAAAA 23103 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCC-AGACAAGGCACCAGGTCTCTCCGACGCGGTGG 75800 | |||||||| | || || || | || | ||| | || | | ||| Sbjct 23102 CAACCAGGACTGGTCTCTGATGTGCCCCAGTGAGTGCCCTGGGT-TGGATGA-GTGTTGG 23045 Query 75801 GTG-AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACT 75859 | | |||||||||| |||||||| | |||||| |||||||||||| || ||| | Sbjct 23044 GGGGAGGAGTTTGAGAAGCTCTACACTCAATATGAACAGGAGGGTAGAGTGAA-GCGGGT 22986 Query 75860 GTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 | | || | | | ||| ||| | || || || | || ||||| || || |||||||| Sbjct 22985 GGTCAAGGCTCAGCAGTTGTGGTATGCCATCATCGAGTCTCAGACAGAAACAGGAACACC 22926 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 || ||| | ||||| ||||| ||||||| |||||||||||| |||||||||| || || Sbjct 22925 TTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAACCAGCAGAATTTGGGCACCAT 22866 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 ||| || || | ||||| || ||| | ||||| ||| || ||||| ||| || Sbjct 22865 CAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTATACAAGCAAAGATGAAGTGGCCGT 22806 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGA 76098 || || ||||| || || || || | |||||| | | || ||||| ||||| Sbjct 22805 CTGTAACTTGGCCTCCATTGCTCTCAACATGTATGTTACTCCGGA---ACGCACCTTTGA 22749 Query 76099 TTATGAAAAACTTCATGAAATCAC-AAAG--ATTGTTACCAAAAATCTAAACCGAGTCAT 76155 | |||| ||| |||| |||| ||||| | ||| || ||| |||| Sbjct 22748 CTTCAAAAAGCTTGCCTCGGTCACTAAAGTAATTGT---AAGAAACCTCAACAAGATCAT 22692 Query 76156 TGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACC 76212 ||||| || | || || || ||| | | | || || || | ||| ||||| || Sbjct 22691 TGACATTAACTACTACCCAGTTCCTGAAGCAGAG---AATTCAAACAAGCGCCACAGGCC 22635 Query 76213 TATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGA 76272 || || | ||||| || ||||| || |||| || || | || || ||||||| Sbjct 22634 AATCGGGATTGGTGTGCAGGGTCTTGCAGATGCCTTCATCCTCATGCGTTATCCATTTGA 22575 Query 76273 TTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCT 76332 ||||||| || | ||||| | |||||||| ||||| || | || |||| Sbjct 22574 AAGCCCTGAAGCCCAGCTGCTGAATATCCAGATCTTTGAGACCATCTACTATGCTGCCCT 22515 Query 76333 GGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCC 76392 |||||| || || || ||||| ||| | || | |||||||||| || ||||| Sbjct 22514 GGAGGCAAGCTGGGAGTTGGCAGAAAAAGATGGGCCTTATGAGACATACCCAGGCTCTCC 22455 Query 76393 CGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGTG-AAACCAAGCTCAACTA 76449 | | ||| | || |||| ||| ||||||| |||||| || |||| || Sbjct 22454 AGTGAGTAGAGGCATTCTGCAGTATGACATGTGGGAAAAGGTGCCCACTGAGCT---CTG 22398 Query 76450 CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGAT 76509 |||||| | | || ||||| || | | ||| | | |||||||| ||| | Sbjct 22397 GGACTGGAAGCTGCTTAAGGAGAAGATTGCTAAACACGGTGTGAGAAACAGTCTGTTGTT 22338 Query 76510 GGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACC 76569 ||| || ||||| ||||||||||| |||||||| | || || ||||| | | | ||| | Sbjct 22337 GGCCCCCATGCCCACAGCCTCCACAGCACAAATACTCGGCAACAATGAGTCCATCGAAGC 22278 Query 76570 ATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAA 76629 ||||| | ||||||||| | ||| |||| | || |||||| ||||| ||| Sbjct 22277 CTACACCAGCAACATCTACACACGTAGAGTCCTCTCTGGAGAGTTTCAGATTGTAAACCC 22218 Query 76630 GCACCTCGTCAATGACCTCA 76649 || || | || ||||||| Sbjct 22217 ACATCTGCTGAAGGACCTCA 22198 >seq19576 Length=429644 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 65089 GCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTG 65148 || ||||| ||| ||||| || |||||||| || || || ||| ||||||||| || Sbjct 416901 GCATTTGCAGCTGTAGAGGGAATTTTCTTCTCTGGATCCTTTGCCGCCATTTATTGGCTG 416960 Query 65149 AAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCT-CAAATGAACTTATTTCCCGAGATGA 65207 || ||| ||||||| ||||| || || | ||| | | ||||||||||| | ||||||| Sbjct 416961 AAAAAGAGGGGTCTAATGCCTGGGCT-TACTTATTCCAATGAACTTATCAGCAGAGATGA 417019 Query 65208 GG 65209 || Sbjct 417020 GG 417021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596221635866560