Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq22890 170 2e-36 seq13632 170 2e-36 seq12728 170 2e-36 seq17965 161 1e-33 seq13138 161 1e-33 seq6917 161 1e-33 seq10525 143 3e-28 seq28053 131 2e-24 seq7998 118 1e-20 seq23246 96.9 4e-14 seq22297 86.0 8e-11 >seq22890 Length=4053 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 3589 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 3648 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| ||||||||| || | | Sbjct 3649 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCGCCGATGCGCTCAAAGA 3708 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 3709 TGTCGTTGACAAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 3768 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 3769 GGACCTGCTTCAGCACCTTGTA 3790 >seq13632 Length=2547 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 723 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 782 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| ||||||||| || | | Sbjct 783 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCGCCGATGCGCTCAAAGA 842 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 843 TGTCGTTGACAAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 902 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 903 GGACCTGCTTCAGCACCTTGTA 924 >seq12728 Length=18623 Score = 170 bits (188), Expect = 2e-36 Identities = 159/202 (79%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 1836 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 1777 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| ||||||||| || | | Sbjct 1776 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCGCCGATGCGCTCAAAGA 1717 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1716 TGTCGTTGACAAAAGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 1657 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1656 GAACCTGCTTCAGCACCTTGTA 1635 >seq17965 Length=24390 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 21633 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 21574 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| ||||||||| || | | Sbjct 21573 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCGCCGATGCGCTCAAAGA 21514 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||| | || ||||||||| |||||||| Sbjct 21513 TGTCGTTGACAAAAGAGTTCATGATGCTCATGGCTTTAGAGGAGATGCCGGTGTCGGGGT 21454 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 21453 GAACCTGCTTCAGCACCTTGTA 21432 >seq13138 Length=12877 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 707 GCTTGGCCAGCTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 766 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| |||||| | |||| | Sbjct 767 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCGCCGATCCTCTCGAAGA 826 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 827 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 886 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 887 GGACCTGCTTCAGCACCTTGTA 908 >seq6917 Length=20139 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 172 GCTTGGCCAGATCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 231 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| ||| |||||| |||||| | |||| | Sbjct 232 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGGGAGGCCTCTCCGCCGATCCTCTCGAAGA 291 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 292 TGTCGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 351 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 352 GGACCTGCTTCAGCACCTTGTA 373 >seq10525 Length=65857 Score = 143 bits (158), Expect = 3e-28 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| || ||| ||| | |||||||| |||||||||||||| | | | ||| | Sbjct 4450 TGGCCAACTCTCCGGGCAGCAGGAGGCGCACAGCGGTCTGGATCTCCCTGGAGGTGATGG 4509 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | |||||||| ||| ||||| |||||| | |||| |||| Sbjct 4510 TGGAGCGCTTGTTGTAATGCGCCAGGCGGGAAGCCTCTCCGCCGATCCTCTCGAAGATGT 4569 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||| | |||| |||||| || ||||||||| | Sbjct 4570 CGTTGACGAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATACCGGTGTCGGGGTGGA 4629 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||||||||||||||| Sbjct 4630 CCTGCTTGAGCACCTTGTA 4648 >seq28053 Length=77842 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || |||||||||||||| ||||| | | | || Sbjct 70742 GCTTGGCCAGCTCTCCGGGCAACAAAAGACGCACGGCGGTCTGAATCTCCCTGGAGGTGA 70801 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||| |||||| | |||| | Sbjct 70802 TGGTGGAGCGCTTGTTATAGTGCGCCAGGCGAGAAGCCTCACCGCCGATCCTCTCGAAGA 70861 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||| | Sbjct 70862 TGTCGTTGACGAAGGAGTTCATGATGCTCATTGCCTTGGAGGAGATGCCAGTGTCGGGAT 70921 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||| || ||||| ||||| Sbjct 70922 GGACCTGTTTTAGCACTTTGTA 70943 >seq7998 Length=12346 Score = 118 bits (130), Expect = 1e-20 Identities = 145/199 (73%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| || | ||||||||||||||||||||||| | | | ||| | Sbjct 4865 TGGCCAGCTCTCCGGACAGCAGGAGGCGCACGGCGGTCTGGATCTCCCCGGAGGTGATGG 4806 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| |||||||||| ||||| |||||| | ||| || | Sbjct 4805 TGGAGCGCTTGTTGTAGTGCGCCAG-------GCCTCTCCGCCGATCCTCACGAAGATAT 4753 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||||| || |||||||||| || | |||| ||||||||| ||||||||| | Sbjct 4752 CGTTGATGAAGGAGTTCATGATGCTTATGGTCTTGGAGGAGATGCCGGTGTCGGGGTGGA 4693 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 || |||| ||||||||||| Sbjct 4692 CCAGCTTCAGCACCTTGTA 4674 >seq23246 Length=13328 Score = 96.9 bits (106), Expect = 4e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||||||| ||| ||| || ||| || || || ||||| | ||| || || ||| | Sbjct 5601 TGGCCAGTTCCCCGGGCAGGAGCAGCCGGACCGCAGTCTGCACCTCTCGGCTGGTGATGG 5542 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || |||||||||| | ||||| | |||| || || ||| |||| | |||| | || Sbjct 5541 TGCTGCGCTTGTTGTACTGCGCTAAACGGGACGCTTCCGTGGCGATCCTCTCGAAAAGGT 5482 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | || || || |||||||||| ||| | | ||||||||||| ||| || |||| Sbjct 5481 CATTCACGAAGGAGTTCATGATGCTCATGGCTCGGCTGGAGATGCCCGTGTCCGGATGCA 5422 Query 1254526 CCT 1254528 ||| Sbjct 5421 CCT 5419 >seq22297 Length=13152 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || ||| | ||||| ||| ||| || || | ||| || ||||||||||| Sbjct 7836 GCGGCGAATTACTTGGACATTAAGGGTCTTCTGGACGTGACGTGTAAAACTGTGGCCAAC 7777 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || ||| | |||||||| ||| | ||||| |||||||||||| ||| Sbjct 7776 ATGATCAAAGGAAAGACCCCCGAGGAAATCAGGAAGACTTTTAACATCAAGAACG 7722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6103309897761854