Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq11038 118 1e-21 seq27510 107 2e-18 >seq11038 Length=78219 Score = 118 bits (130), Expect = 1e-21 Identities = 492/762 (65%), Gaps = 36/762 (5%) Strand=Plus/Plus Query 138483 GTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTA 138542 ||| || | ||||| | ||||| | |||||| || || | | |||| ||| ||| Sbjct 22202 GTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTGTGTA 22261 Query 138543 AATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGC 138602 |||||| ||||| | | || | || || ||||| || || || || || |||| || Sbjct 22262 GATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAGGC 22321 Query 138603 GGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGA--AGCTTGATTCGTTCC 138660 || |||||| |||| ||| ||| || | | |||||| ||| ||| ||| Sbjct 22322 TGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTC--TCC 22379 Query 138661 TTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAAC 138720 || ||| | ||||||||| | || | || || | |||||| || ||||| | Sbjct 22380 TTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATACTGCAGA 22439 Query 138721 ATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGC-GCCAA 138779 || || ||| | ||| |||| ||| | || || | || | || || | ||||| Sbjct 22440 ATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATA-AGGCCCATCTTTTTCTGCCAA 22498 Query 138780 CTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAA 138839 ||| ||| ||||| || ||| ||||||| || || || ||||| ||| |||| Sbjct 22499 CTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAGCAG 22558 Query 138840 TCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTG 138899 |||| || | ||| || | || || | | |||| || || || || || || Sbjct 22559 CTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGACCCTG 22618 Query 138900 CACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATA---GG 138956 ||| || | |||| || | |||||| ||||| || | ||||| | || Sbjct 22619 CACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAA---TTCTCTGCTTCAGGAACTGG 22675 Query 138957 ATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGC 139014 || ||||| | || ||||| ||||| | |||| || | || ||||| | | || Sbjct 22676 GTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGAGGC 22735 Query 139015 TTTAATCGTTCAAAA-TCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTT 139073 || | || || || | |||| || || || || ||| | |||| Sbjct 22736 ---AAGCTTTTTGAAGTCAAAGGTGC-------GT--TC--CGGAGTA-ACATACATGTT 22780 Query 139074 GACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCT-GTAT--TCGAC 139130 || | ||| ||||| | ||| || || |||||||| || | ||| |||| || || Sbjct 22781 GAGAGCAATGGAGGCCAAGTTACAGACGGCCACTTCATCT---TTGCTTGTATACTCCAC 22837 Query 139131 AATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCG 139190 ||| || | ||||| ||||| || ||||| || || ||||| || || || || || | Sbjct 22838 AATCTCAGTGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCT 22897 Query 139191 GTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 |||||| ||||||||||| | ||| || ||||| || ||||| Sbjct 22898 GTTACAGGCATCTTTGTACAACATGTAAGGTGTTCCTGTTTC 22939 >seq27510 Length=34911 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| |||| || || || |||||||| || || | ||||| || | | Sbjct 30362 ATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCGAGT 30303 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || ||||||||||| || ||||| || ||||| || || Sbjct 30302 GACACAATTGAAAACGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCTGACCAG 30243 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| ||||| || || || || || ||| | | | || || || ||| Sbjct 30242 CAGAGGCTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGCACTCTCTCTGACTACAAC 30183 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||||||||| | || || | ||||| Sbjct 30182 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTACGTCTGAGAGGAGG 30136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449635185977360