Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq43552 324 1e-82 seq44075 114 1e-19 seq43642 95.1 9e-14 >seq43552 Length=261649 Score = 324 bits (358), Expect = 1e-82 Identities = 921/1408 (65%), Gaps = 12/1408 (1%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| ||||| || || ||||| ||||| | || ||||| || ||||| || ||||| Sbjct 29816 GCAGAGACATTGAGGATGCCATTAGCATCGATGTCGAATGTTACCTCAATCTGTGGGACT 29875 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| | || ||||||||||| || | ||| | || || || || |||||| Sbjct 29876 CCTCTTGGGGCTGGTGGGATCCCCGTCAGGTCAAACTTGCCAAGGAGGTTGTTGTCTTTA 29935 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || | | |||||| || || | ||||| || | | || ||||| || || Sbjct 29936 GTCATGGCCCTTTCACCTTCAAACACCTGGATGAGCACACCTGGCTGGTTATCGGAGTAG 29995 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 || | || | | || || ||| || || || ||||| | | || | |||| Sbjct 29996 GTGGAGAAGATTTGGGTTTGTTTGGTGGGGATGGTGGTGTTACGCTTGATCAACGCGGTC 30055 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || | || || |||||||| | || | ||| || |||| ||||| | | | | Sbjct 30056 ATTACTCCTCCTGCTGTTTCAATGCCCAAAGACAGTGGAGCAACATCTAGCAAAAGGAGG 30115 Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 | || | || || || | || | || ||||| || || | ||||| ||||| Sbjct 30116 TCCTGGACATTCTCTGAGGTGTCCCCCATCAGGATAGCAGCCTGTACCGCAGCTCCATAG 30175 Query 281786 GCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAA 281845 || || |||||||| || || | ||| || | | | ||||| || || | Sbjct 30176 GCCACCGCTTCATCTGGGTTGATGCTTTTGTTCAACTCCCTTCCATTAAAGAAGTCCTGC 30235 Query 281846 AGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACC 281905 || |||| | | || ||||| | | ||||| ||||| | || || || | | | Sbjct 30236 AGTAGTTTTTGGATTTTGGGAATTCTCGTGGATCCACCAACCAGGACTATGTCGTTGATC 30295 Query 281906 TGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTA 281965 | || || |||| || | || |||| |||| || || || || || | || Sbjct 30296 TTGGACTTGTCCATCTTGGCGTCTTGTAAAGCTTTCTCTACAGGGTCTAGCGTTCCCCTG 30355 Query 281966 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATT 282025 || | |||||| |||||||| ||| |||| | ||| | | | | | |||||||| Sbjct 30356 AAGAGGTCTGAGTTGAGTTCTTCAAATCTAGCGCGAGTGATTGAGGTGTAAAAATCAATT 30415 Query 282026 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTA 282085 ||||| | | ||| |||| ||| || | | ||| || || ||||| | | || Sbjct 30416 CCTTCATATAGAGAGTCAATTTCGATGCTTGCTTGGGTGCTGGATGATAGGGTCCTCTTG 30475 Query 282086 GCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT--TGCTGATTGATTCAAATCTG 282143 || |||||||| || || | || || | | ||| | || | ||| | | ||| Sbjct 30476 GCGCGTTCACAAGCCGTTCGCAGCCTCCTCACTGCTCTCTTGTT--TTGGCTAATGTCTT 30533 Query 282144 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203 | || | |||||||| || || |||||| | | || | |||||| ||||| |||| Sbjct 30534 TCTTGTGCTTTCTCTTAAACTCATCAACAAAGTGCTTCACCATACGATTGTCAAAGTCTT 30593 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 | || ||||| | || | || | || ||| | |||| |||| |||||||||| | Sbjct 30594 CTCCGCCCAAGTGTGTGTCGCCGGCTGTGGCTTTCACTTCAAAAATACCATCTTCAATTG 30653 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 282323 || | | || ||| || |||||||||| ||||||||| || ||||| || Sbjct 30654 TCAGGATGGATACGTCAAAAGTGCCACCACCCAGATCAAAAATGAGAACATTTCGCTCCC 30713 Query 282324 TGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAA 282380 |||| ||| || || |||||||| |||| |||||| || ||||||||||| || | Sbjct 30714 C-TCTT--TTTCCCTTGTCTAGACCATATGCAATAGCAGCTGCGGTTGGTTCATTGATGA 30770 Query 282381 TTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAAT 282440 |||||| ||||| || |||| ||| ||| |||||||| |||||||| | ||| || | Sbjct 30771 TTCTCAGTACATTCAGGCCAGAAATAACTCCGGCATCTTTTGTGGCTTGGCGTTGGGAGT 30830 Query 282441 CGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATATAAGCG 282499 |||| ||||| ||||| || || || || |||| | ||| |||| |||| ||| || Sbjct 30831 CGTTGAAATAAGCAGGGACTGTGATGACTGCATTGGACACTCTCTTCCCCAA-ATACGCC 30889 Query 282500 CTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGC 282559 ||| ||| ||||| ||| |||| |||||| || |||| ||||||| || | | Sbjct 30890 TCTGCAATTTCCTTCATCTTAACCAAAACCATTGACGAGATTTCTTCTGGATAAAACGCC 30949 Query 282560 TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTA 282619 || |||| || || ||||| | | || || || || | || ||||| Sbjct 30950 TTTATTTCACCTTTGTACTCCACTTCTACTTTGGGCTTGCCACTGTCACTGATGACTTTG 31009 Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679 || |||||| ||||| || ||||| || | ||||||| ||| | ||| || || | | Sbjct 31010 AAAGGCCAAAGCTTCATGTCAGATTGCACGATATGGTCATCAAATTTTCTCCCGATGAGT 31069 Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 | || |||||||| || || || | || || | || | || | ||||||||| || Sbjct 31070 CTCTTGGCATCAAAGATGGTGTTAGCCGGGTTCATGGCCACCTGGTTTTTGGCTGCGTCA 31129 Query 282740 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 282799 ||||| || | || || || || || | |||||| || || ||||| || || || Sbjct 31130 CCAATTAGCCGCTCGGTGTCAGTGAAGGCAACATAACTGGGGGTGGTGCGGTTGCCCTGG 31189 Query 282800 TCATTCGCAATAATTTCAACTTTACCAT 282827 || || || || || || ||||| |||| Sbjct 31190 TCGTTGGCGATGATCTCCACTTTGCCAT 31217 >seq44075 Length=47006 Score = 114 bits (126), Expect = 1e-19 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||| || ||||||||||| ||||| || ||||| |||||||| | ||| | | Sbjct 5965 GCAGACACATTCAGTATACCATTGGCGTCCAAGTCGAATGTTACTTCAATCTTAGGAATC 5906 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || || || | || |||||||| ||||| |||| | |||| | | ||||||||||| Sbjct 5905 CCCCTTGGACCTGGGGGGATCCCAGTCAAATCAAATTTCCCCAAACTGTTATTATCTTTG 5846 Query 281546 GTGAATTTTCGTTCACCCTCGAA 281568 || ||| || ||||||||| || Sbjct 5845 GTCAATGATCTTTCACCCTCAAA 5823 Score = 98.7 bits (108), Expect = 7e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| ||||||||| ||||| ||||| ||||| | | ||||||||||||| | Sbjct 4739 CCGTAAGCAATAGCAGCAGCTGTTGGCTCATTGATAATGCGAAGAACATTAAGACCACAA 4680 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || |||||||||||| || || || | || ||||| || || || || || ||||| Sbjct 4679 ATGACTCCTGCATCTTTTGTAGCCTGACGCTGAGAATCATTGAAGTAGGCTGGCACAGTC 4620 Query 282464 ATAACGGCATCTGTTACTT 282482 | ||| |||| |||||| Sbjct 4619 ACAACAGCATTATTTACTT 4601 Score = 93.3 bits (102), Expect = 3e-13 Identities = 204/304 (67%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 ||||| || || |||| |||||||| |||||| | | |||||| ||||| | | Sbjct 5144 TCAATCCCCTCAAACAGAGAATCAATTTCAATGCTTGCTTGAGTGCTGGAAGACAAGGTG 5085 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG--CTTTTGCTGATTGATTCA 282137 || || || | ||||| ||||| | || | || | | |||||| || || | | Sbjct 5084 CGCTTGGCCCTCTCACAGGCTGTGCGAAGGCGACGCATTGACCTTTTGTTGGTTCTT--A 5027 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 ||| ||| | || | ||||| || | | | | | || | ||||||||||| Sbjct 5026 TGTCTACTTTGTGCTTACGGTTGAACTCAGTCATAAAGAAGTTCACCATACGATTATCAA 4967 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 |||||||||| || || | ||||| |||| ||||| | |||| |||| || || | Sbjct 4966 AATCTTCACCACCTAAATGAGTATCCCCTGCTGTAGCCTTCACTTCAAAAATACCTTCGT 4907 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | || || | |||||| || || || |||| |||||| || || ||||||| Sbjct 4906 CAATACTCAGAATGGAGACATCAAATGTGCCGCCCCCCAAATCAAAGATGAGCACATTCA 4847 Query 282318 TTTC 282321 |||| Sbjct 4846 TTTC 4843 >seq43642 Length=49772 Score = 95.1 bits (104), Expect = 9e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 ||| |||||||||||||||||||| | ||||| ||||||||||| || ||||| ||||| Sbjct 32068 CACGTTAAGAATACCATTGGCATCAATGTCAAAGGTGACTTCAATCTGGGGGACACCTCT 32127 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGT 281547 ||||||| ||||| || | | ||| ||||||| | || || |||||||| Sbjct 32128 TGGAGCAGGCGGGATACCAGTGAGCTCAAACTTTCCCAGGATGTTGTTGTCTTTAGT 32184 Score = 86.0 bits (94), Expect = 5e-11 Identities = 108/147 (73%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| || || || ||||||||||| || || | || ||| Sbjct 33188 TTTTTGTCCAAGCCATAGGCAATGGCTGCTGCTGTTGGTTCATTGATGATACGCAGCACA 33247 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| ||| |||||||| || || || | || || || || || || Sbjct 33248 TTCAGCCCAGCAATAGCTCCAGCATCTTTGGTCGCCTGGCGCTGGGAGTCATTGAAGTAG 33307 Query 282452 GCAGGAACAGTAATAACGGCATCTGTT 282478 ||||| ||||| | ||| |||| |||| Sbjct 33308 GCAGGGACAGTTACAACTGCAT-TGTT 33333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738339492993612