Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq44590 109 1e-18 seq34043 100 5e-16 >seq44590 Length=141216 Score = 109 bits (120), Expect = 1e-18 Identities = 120/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 |||||||||| | | |||||||| || |||||| | || |||||||||||||| || || Sbjct 1341 TGGTGGTACTTTGTCTCTAAAGGCATTGAATACCTGGACACAGTGTTTTTCATTCTGAGA 1282 Query 58445 AAAAAGTTTAATCATGTTAGCTTTC-TACACGTATATCATCATTTTACTATGTTTACTTT 58503 |||||||| || || |||| ||||| | || || || || || | || ||||| ||| | Sbjct 1281 AAAAAGTTCAACCAAGTTA-CTTTCTTGCATGTGTACCACCACTGCACCATGTTCACTCT 1223 Query 58504 AGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | ||| | || || |||||| | |||||||| ||| Sbjct 1222 GTGGTGGATCGGCATCAAATGGGTAGCAGGAGGACAG 1186 >seq34043 Length=9316 Score = 100 bits (110), Expect = 5e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 ||||||| ||| | ||||||||||| || |||||||| | || | | || || || Sbjct 8444 GATAGCCTCAGCTCTTTGGTGGTACTACATTTCTAAAGGAGTGGAGTTTCTGGACACTGT 8385 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 |||||||| | ||||||||||| || || || ||||||||||| || || ||||| | Sbjct 8384 ATTTTTCATTTTGAGGAAAAAGTTCAACCAAGTAAGCTTTCTACATGTCTACCATCACTG 8325 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAGG 58541 || ||||| | || | ||| | || || |||||| | | ||||| |||| Sbjct 8324 CACCATGTTCATCTTGTGGTGGATTGGCATCAAATGGGTCCCCGGAGGACAGG 8272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902884262832320