Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq24268 102 3e-18 seq8565 102 3e-18 seq26031 100 9e-18 seq11690 100 9e-18 seq42998 98.7 3e-17 seq42741 98.7 3e-17 seq42393 98.7 3e-17 seq24923 98.7 3e-17 seq40508 78.8 3e-11 >seq24268 Length=1663 Score = 102 bits (112), Expect = 3e-18 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 2762 GTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGG 2821 || ||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1012 GTATATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGG 1071 Query 2822 TTCAACCCCGGGCTTCAGC 2840 ||| | |||||| ||| || Sbjct 1072 TTCGATCCCGGGTTTCGGC 1090 >seq8565 Length=22446 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 6787 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 6728 Query 2825 AACCCCGGGCTTCAGC 2840 || || ||| ||| || Sbjct 6727 AATCCTGGGTTTCGGC 6712 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2406 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2465 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2466 CCGGGTTTCGGC 2477 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5208 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5149 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5148 CCGGGTTTCGGC 5137 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 10019 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 10078 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 10079 CCGGGTTTCGGC 10090 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3218 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3277 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 3278 CTGGGTTTCGGC 3289 >seq26031 Length=12495 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 1802 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 1743 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1742 CCCGGGTTTCGGC 1730 >seq11690 Length=65624 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 41991 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 41932 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 41931 CCCGGGTTTCGGC 41919 >seq42998 Length=53288 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3906 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3847 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3846 CCGGGTTTCGGC 3835 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 11342 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 11283 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 11282 CCGGGTTTCGGC 11271 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 10231 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATC 10172 Query 2829 CCGGGCTTCAGC 2840 || || ||| || Sbjct 10171 CCAGGTTTCGGC 10160 >seq42741 Length=43522 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 43355 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 43414 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 43415 CCGGGTTTCGGC 43426 >seq42393 Length=165900 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 150139 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 150198 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 150199 CCGGGTTTCGGC 150210 >seq24923 Length=2148 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 147 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 206 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 207 CCGGGTTTCGGC 218 >seq40508 Length=28065 Score = 78.8 bits (86), Expect = 3e-11 Identities = 84/107 (79%), Gaps = 8/107 (7%) Strand=Plus/Plus Query 2734 GCATGATACAATGACATCTTTGTACTGTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGC 2793 |||| |||||||||||| |||| | | || || || |||||||| |||||| || Sbjct 17350 GCAT-ATACAATGACAT--TTGT-CAGGCTT----GCCAAAATAGCTCAGCTGGGAGCGC 17401 Query 2794 ATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 || ||||||||||||||||| ||||||||||| || ||| ||| || Sbjct 17402 GTTGGACTGAAGATCTAAAGGGCCCTGGTTCAATCCTGGGTTTCGGC 17448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15841510908990