Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11038 668 0.0 seq15624 140 4e-28 seq19576 129 8e-25 >seq11038 Length=78219 Score = 668 bits (740), Expect = 0.0 Identities = 1351/1988 (68%), Gaps = 35/1988 (2%) Strand=Plus/Plus Query 68623 TGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTCCACAATTTTCTC 68682 || ||||||||| | | || || ||||||| ||||| || ||||||| | Sbjct 22134 TGTATGGATCCATTTTGAGCAATGATCTTATTCTTCATCTCCTCGTTCCACAGCCCCCGT 22193 Query 68683 TCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTA 68742 || || | | | || ||||| || || || || ||||| || ||||| | |||||| Sbjct 22194 TCAGTGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTA 22253 Query 68743 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCA 68802 || ||||| || || ||||| || | ||| | || ||||| || || || ||||| || Sbjct 22254 CGTGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCT 22313 Query 68803 GTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATT 68862 || || || || ||||| || |||| ||| | ||| ||||| | ||| ||| | || Sbjct 22314 GTGGAGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATC 22373 Query 68863 TTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTAT 68922 || || || || | ||||| ||||| || |||| || || | ||| | || || Sbjct 22374 TTCTCCTTAAGCAGCTTCCAGTCCCAGAGCTCAGTGGGCACCTTTTCCCACATGTCATAC 22433 Query 68923 TGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCA 68982 || ||||| || |||| | || || ||||| |||||||| || || | ||| Sbjct 22434 TGCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCT 22493 Query 68983 GCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTG 69042 || | || || |||||||| | ||| | || || || || || || |||| |||| Sbjct 22494 GCCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTC 22553 Query 69043 AGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAAT 69102 || || ||||| | || || ||||||||| | | || || || |||||||| | Sbjct 22554 AGCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGA 22613 Query 69103 CCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATA 69162 ||||| || ||||| ||||| || || || | ||| |||||| | || ||||| |||| Sbjct 22614 CCCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACT 22673 Query 69163 GGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTA---ACCACG 69219 || || || ||||| || || || || || || |||| || | ||||||| ||| | Sbjct 22674 GGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGAG 22733 Query 69220 TC---CTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATAACAAACATATTCAGTGCT 69273 | |||| |||| | ||||| ||| | ||||| |||| || || || Sbjct 22734 GCAAGCTTT---TTGA---AGTCAAAGGTGCGTTCCGGAGTAACATACATGTTGAGAGCA 22787 Query 69274 ACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTA 69333 | || || | ||||| || || || |||| ||| ||| | | ||||| || Sbjct 22788 ATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAGTG 22847 Query 69334 CATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCG 69393 || | ||||| |||||||| || |||| ||| ||||| |||||||| |||||||||| Sbjct 22848 CACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCA 22907 Query 69394 TCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAA 69453 || ||||| | || | || || || ||||| ||||||| ||||| || | | ||| Sbjct 22908 TCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACCAC 22967 Query 69454 ACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCT--TTTTCATATTGTGTATATA 69511 | | ||| || | || ||| || || | || | ||||||||| || || | Sbjct 22968 AACTGCTGAGCCTTGACCACCCGCTTC--ACTCTACCCTCCTGTTCATATTGAGTGTAGA 23025 Query 69512 GCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCA 69571 || || || || || |||||| |||||||| ||||| || ||| | || ||||||| Sbjct 23026 GCTTCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACATCA 23085 Query 69572 ATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTA 69631 ||||| | | | | | || | ||||| || ||||| || ||||| || || | Sbjct 23086 GAGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGC-A 23144 Query 69632 TA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAAC 69690 || ||||| |||| | || | || || || || || || || || || || || || Sbjct 23145 TAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGAAG 23204 Query 69691 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTT 69750 || | | |||| | |||||||| || || ||||| || | | |||||||||||||| Sbjct 23205 TCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTATTG 23264 Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || || || | ||| | || ||||| || || |||||||||||||| | || ||| Sbjct 23265 CCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGCCA 23324 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || |||||||||||||||| ||| ||||| ||| ||| | |||| |||| | | Sbjct 23325 TTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAATACAGCTAACTGCT 23384 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| || |||||||| ||||||||| |||||||| |||| | ||| ||||| || Sbjct 23385 ACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAATG 23444 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTA-T 69989 || || ||||| ||||| ||||| || || || ||||| || | || | | || | Sbjct 23445 CCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTG-GGGTCTATT 23503 Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 || || || || || | || ||||| || ||||||||||| || ||||| ||||| || Sbjct 23504 GGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTT 23563 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||| || ||||| |||| |||||||| | || ||||| | || || | ||| | Sbjct 23564 GTAGGTCTCAATGGCTGCATCTATATCAGTGTTGTGGATTCCAACAGCTACTCTCATGAG 23623 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| ||||| || || || || |||| ||| ||||||| |||||| || || | Sbjct 23624 CATGTGCTGTGGGCGCTCAGCCACTTTACCATTGATTTTCAGCAGGTAGGAGCGCTCTAA 23683 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGAATTTAG 70229 || ||||| ||||| | ||||| ||||| || || || ||||| ||| |||| || || Sbjct 23684 TGTCTTAAAGCCAAAGAAATTGTAAGAAAAATCCCTATCATAAATTATAGCAGAGTTGAG 23743 Query 70230 TTTATCCTTATATTTGGTA--ACTATATCCA-TAACAGTAGGTGAGATAATCGGAGA--- 70283 || | | |||| | || ||||| | | | || ||||| || || || Sbjct 23744 GCGGTC--TTTGTTTGCAAGGACAATATCTAGGGTCTCTTGG-GAGATCATGGGGGAGTG 23800 Query 70284 TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAATCTTCCATTACATCACTAAATAG 70343 || || |||| |||||| ||||||| ||| | ||| ||||| |||||||| || | Sbjct 23801 GCGCTT---ATTTAAAGGATTGACATAGTGGAACAGATCCTCCATGACATCACTGAACAC 23857 Query 70344 tttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGCATAGTC 70403 || || || || || || | || || | || || | || || || || ||||| || Sbjct 23858 CTTCTTGGTCTCTTTATGGAGGTTGGACACAGCAATCCGTGCAGCCAGGATGGCATAATC 23917 Query 70404 AGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTCTATAGT 70463 || || | || || || || || || || ||||| | || || || || | ||| Sbjct 23918 TGGGTGCTTCGTGGTCAGTGTGGCAGCAATCTCTGCAGCAAGTGTGTCCAACTCCACAGT 23977 Query 70464 TGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATTTTGATAGGATCTATGAA 70523 || |||||| | || || ||||| || || ||||| | |||| | || || | || Sbjct 23978 GGTCACTCCGCTGTACAGACCTTGGATCACCTTCATCGTGATTTGTGTGGGGTCCACAAA 24037 Query 70524 TTCTGTGTTCAGACCATAACATAATTTTCTAATACGAGATGTAATTTTATCAAACATAAC 70583 |||| || || |||||||| | || || ||||| || |||||||||||||| || Sbjct 24038 CTCTGCATTGAGCCCATAACAGAGCTTCTGGATTCGAGAGGTGATTTTATCAAACATGAC 24097 Query 70584 ATTCTCCT 70591 ||||| Sbjct 24098 GCGCTCCT 24105 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || || || ||||| || || | |||| ||| |||| || || |||||||||| Sbjct 21872 TCCAACCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 21931 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||| || ||| |||| || | || || ||||| || | | | ||| Sbjct 21932 TTAGGGACTGGCTTTGGTCAATGTAAGCACCGCGGTCGGCAGCCATCTTGAGTACAGTCT 21991 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | || | |||||||||| ||| ||| | | |||||| | ||||||||| Sbjct 21992 TCTGTGATATTTCCCAAACAGTTTTATACAACTGTTTTAAATCATCTGG 22040 >seq15624 Length=12484 Score = 140 bits (154), Expect = 4e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || ||| |||||||||||||||||| || || ||||||||||||| || ||||| || Sbjct 11336 GAGCCAGCATATGTTTCATAAGGTCCATCTTGGGCAGCTAGTTCACAGCTGGCCTCCAAA 11395 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 ||| | |||||||| || || ||||||| | ||||||| || || | | ||| ||| Sbjct 11396 GCAGCATAATAAATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCCTTTTCACTTTCG 11455 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 ||||||||| | | ||||| || || || || | |||||||| ||||| || |||||| Sbjct 11456 AATGGATAACGCATGAGAATGAAGGCGTCCGCAAGACCCTGAACACCAATCCCAATAGGT 11515 Query 69127 CTATG 69131 || || Sbjct 11516 CTGTG 11520 >seq19576 Length=429644 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||| | || || |||||||||||||| | ||||| Sbjct 417021 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGCCCAGGCATTAGACCCCTCTTTT 416962 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||| | ||||| ||||| |||||||| ||||| || || ||||| |||||||||| Sbjct 416961 TCAGCCAATAAATGGCGGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 416902 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| ||| || || Sbjct 416901 CCACAATTCTTTCACC 416886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686508143269680