Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11038 226 4e-54 seq15624 96.9 4e-15 seq19576 82.4 1e-10 >seq11038 Length=78219 Score = 226 bits (250), Expect = 4e-54 Identities = 946/1462 (65%), Gaps = 46/1462 (3%) Strand=Plus/Plus Query 110646 TGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCA 110705 ||||||| || | || || ||| ||||| |||||| || | |||| ||| | Sbjct 22198 TGAGGTCCTTCAGCAGATGTGGGTTTACAATCTGAAACTCTCCAGAGAGGACTCTACGTG 22257 Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 ||||||||| | ||||| | ||| | | | ||||| || || | |||||||| |||| Sbjct 22258 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGG 22317 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 ||||||| ||||| || |||| ||| |||||||| | | ||| | | || | Sbjct 22318 AGGCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCT 22377 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACT 110882 |||| || | | |||||| || |||| || |||||| ||||||||||| ||| Sbjct 22378 CCTTAAGCAGCTTCCAGTCCCAG---AGCTCAGTGGGCACCTTTTCCCACATGTCATACT 22434 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | ||| | | ||||| || | || ||||| | || | ||| | Sbjct 22435 GCAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTG 22494 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||| || ||||| |||||||||| || | || ||||| |||||||| | ||||| Sbjct 22495 CCAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCA 22554 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 | || ||||||| ||||||| || || | || || |||| || |||| Sbjct 22555 GCAGCTGGGCTTCAGGGCTTTCAAATGGATAACGCATGAGGATGAAGGCATCTGCAAGAC 22614 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 111119 | || ||||| | || || || ||||| ||| | || || || | | | ||| | Sbjct 22615 CCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATT---CTCTGCTTCAGGAA 22671 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAAT--CTTT-GTGA 111176 | || || | || ||||||||| ||| || ||| | ||||| |||| |||| Sbjct 22672 CTGGGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTT---ACAATTACTTTAGTGA 22728 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGG 111236 ||| |||| | ||||| ||||| || | | |||||| | || | Sbjct 22729 CCGAGGCAAGCTTTTTGAAGTCAAAGGTGCGT---TCCGGAGTAACATACATGTTGAGAG 22785 Query 111237 CGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTG 111296 | || || ||||| || || || ||| ||||| || ||| ||||| | ||| || | Sbjct 22786 CAATGGAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAG 22845 Query 111297 TACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACG 111356 | || ||||| | || || || |||||||||| |||||||||||| |||| || | Sbjct 22846 TGCACAAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGG 22905 Query 111357 CATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCC 111416 |||| ||||| | |||||| || || || || || ||||| || | || || || | || Sbjct 22906 CATCTTTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACC 22965 Query 111417 A-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAG 111475 | ||| | | | || | || || || | | |||||| || || | |||||| Sbjct 22966 ACAACTGCTGAGCCTTGACCACCCGC-TTCACTCTACCCTCCTGTTCATATTGAGTGTAG 23024 Query 111476 AGGGCTTCAAACTCCT-CACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGA 111533 || |||||||||| | |||| | | || | ||| | || | || || || | Sbjct 23025 AGCTTCTCAAACTCCTCCCCCCAACAC-TCATCCA-ACCCAGGGCACTCACTGGGGCACA 23082 Query 111534 AAAGAGACCATTGACCACCT--TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG 111591 |||||||| | || | | || |||| ||||||||| || || || ||||| || Sbjct 23083 TCAGAGACCA--GTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAG 23140 Query 111592 GGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAA 111650 || | ||||| |||| || ||| || | ||| ||| || | | ||||| Sbjct 23141 GGCATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTT-CTTCTTCAGCTCAA 23199 Query 111651 GGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG-- 111708 |||| || | | ||| |||||||||||| || || | || | || ||| ||| Sbjct 23200 GGAAGTCAAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTT 23259 Query 111709 -ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAA 111767 | ||| |||| | || ||||| || ||| ||| | || | ||||| || | || Sbjct 23260 TATTGCCACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAA 23319 Query 111768 TACCATCTGATTGACCATTTGTCCCCCGAATACGA-GATTTATTGGCTCTCACATCATGG 111826 |||| ||| | ||||||||| || ||| | | | || | ||| | | || Sbjct 23320 GGCCATTTGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTT-GATCTAATA-CAGCT 23377 Query 111827 ATGTGC-ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCC 111885 | ||| | ||||| || || || | || ||||| | ||||| | | || || | Sbjct 23378 AACTGCTACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATC 23437 Query 111886 ATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGG 111945 ||| || || | || ||| ||||| |||| | |||||||| ||||| | ||| || Sbjct 23438 ATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGG 23497 Query 111946 TC--TTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGA 112002 || |||||| || || ||||| || || || | || ||| ||||| || | | || Sbjct 23498 TCTATTGGTG--CCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAAC-CACTTCTCAGA 23554 Query 112003 CATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGAC 112062 || | || ||| ||||| | | | | ||| || || |||||| || | || || Sbjct 23555 CAGCAGGTTGTAGGTCTCAATGGCTGCATCTATATCAGTGTTGTGGATTCCAACAGCTAC 23614 Query 112063 CCGCATGAACATGTACTGTGGG 112084 | ||||| ||||| ||||||| Sbjct 23615 TCTCATGAGCATGTGCTGTGGG 23636 >seq15624 Length=12484 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||| |||| ||| || || || | |||| || || || || Sbjct 11839 CTCATCTTTGCTTGTGTATTCTACAATCTCAGTGCACAGGTTGCTGGATTTGATGGTGCC 11898 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 | ||||| ||||| |||||| | ||||| ||||| |||||||||||||| || || || Sbjct 11899 TAGATTCTGCTGGTTGCTCTTCCTATTGCATGCATCTTTGTAGAGCATGTATGGGGTACC 11958 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 |||||| |||||||| | | ||| || | ||| Sbjct 11959 CGTCTCTGTCTGTGACTCAATAATGGCATACCA 11991 >seq19576 Length=429644 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTG-AGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||||||| | ||||||||||| | | ||| | || || ||||| ||||||| ||| Sbjct 417021 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTA-AGCCCAGGCATTAGACCCCTCTTT 416963 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 |||| ||||||||| ||| || || || |||||||| || ||||| ||| ||||| Sbjct 416962 TTCAGCCAATAAATGGCGGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAAT 416903 Query 122797 GC 122798 || Sbjct 416902 GC 416901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627665684635200