Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11038 122 1e-22 seq15624 86.0 8e-12 >seq11038 Length=78219 Score = 122 bits (134), Expect = 1e-22 Identities = 579/910 (64%), Gaps = 19/910 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | || | | |||||||||| || | ||||| ||||||||| Sbjct 22260 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCATTGTTGCCGAGTATTTGTGCTGTGGAG 22319 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 |||||||||||||| |||| | || ||||| | | ||| | || ||| ||| Sbjct 22320 GCTGTGGGCATGGGGGCCAACAACAGACTGTTTCTCACACCGTGTTTAGCAATCTTCTCC 22379 Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCT---TTGTCTCCCCCTGCCACATATCAAACTG 118357 || || ||| | |||||| | ||||| | | | || | |||||| ||| |||| Sbjct 22380 TTAAGCAGC-TTCCAGTCCCA---GAGCTCAGTGGGCACCTTTTCCCACATGTCATACTG 22435 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 || || ||| | |||| || || |||||||||| || || || || || Sbjct 22436 CAGAATGCCTCTACTCACTGGAGAGCCTGGGTATGTCTCATAAGGCCCATCTTTTTCTGC 22495 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 ||| || |||| ||||| ||||| || | || || || ||||| || | ||||| Sbjct 22496 CAACTCCCAGCTTGCCTCCAGGGCAGCATAGTAGATGGTCTCAAAGATCTGGATATTCAG 22555 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGAC 118536 || ||| || | ||||| | || ||| | || || |||| || |||| Sbjct 22556 CAGCTGGGCTTCAGGGCTTTCAAATG-GATAACGCATGAGGATGAAGGCATCTGCAAGAC 22614 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGG 118596 | || ||||| | || ||||| | || | | | || || ||| || || | Sbjct 22615 CCTGCACACCAATCCCGATTGGCCTGTGGCGCTTGTTTGAATTCTCTGCTTCAGGAACTG 22674 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 | || | || | || || | | | || || ||| | | || || |||| Sbjct 22675 GGTAGTAGTTAATGTCAATGATCTTGTTGAGGTTTCTTACAATTACTTTAGTGACCGAGG 22734 Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 |||||||| | | ||||| |||| || | | |||||| | || || || | Sbjct 22735 CAAGCTTTTTGAAGTCAAAGGTGCG---TTCCGGAGTAACATACATGTTGAGAGCAATGG 22791 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 | |||| ||||| || | ||||| || || ||||| | ||| || ||||||| Sbjct 22792 AGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCACA 22851 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 |||| | || ||||||||||| |||| || || ||| ||||||| ||||| | Sbjct 22852 AGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCTT 22911 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| | |||||| || || || || || || || |||| || || || | || ||| Sbjct 22912 TGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACC--ACAA 22969 Query 118897 CGGCAG---CTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 | || | || | || || || ||| ||||| | || || | |||||||| Sbjct 22970 CTGCTGAGCCTTGACCACCCGC-TTCACTCTACCCTCCTGTTCATATTGAGTGTAGAGCT 23028 Query 118954 CTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAG 119013 |||||||| || ||| ||| | ||| || || | ||||| | |||| Sbjct 23029 TCTCAAACTCCTCCCCCCAACACTCATCCAACCCAGGGCACTCACTGGGGCACATCAGAG 23088 Query 119014 ACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGA 119073 |||| | | || |||| ||||||||| || || |||||||| || || ||| Sbjct 23089 ACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGCATAGA 23148 Query 119074 AGAGATCCCG 119083 |||| || || Sbjct 23149 AGAGGTCTCG 23158 >seq15624 Length=12484 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || ||| | ||||| | ||||| | |||| ||||| || | ||| ||||| |||||| Sbjct 10805 TAAATGTTGCTGGTGTAAGCCTCAATGGACTCGTTGTTGCCGAGGATCTGGGCAGTGGAG 10864 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| ||| |||||||| Sbjct 10865 GCTGTGGGCATTGGGGCCAGGAGCAGGCTGTT 10896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618074482208720