Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11038 242 4e-59 seq19576 82.4 9e-11 >seq11038 Length=78219 Score = 242 bits (268), Expect = 4e-59 Identities = 971/1498 (65%), Gaps = 48/1498 (3%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||||||| ||||| ||||| | || || | || || || || || ||| | | Sbjct 23636 CCCACAGCACATGCTCATGAGAGTAGCTGTTGGAATCCACAACACTGATATAGATGCAGC 23577 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| ||| || | |||| | | || ||||| ||| || | || || || | Sbjct 23576 CATTGAGACCTACAACCTGCTGTCTGAGAAGTG-GTTCACTCATGCCTCTCCCACTCTGT 23518 Query 104340 TCAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||| || || |||||| ||||||| | ||||| |||||||| | |||| ||||| Sbjct 23517 TCAACGCAGG--CACCAATAGACCCCAGCTCTCCAGCTGCTTCCTGCTGGCCATGAAGGA 23460 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||| || | || || |||| || || | | ||||| | ||||| || | || Sbjct 23459 TGACAGCATTGATGGCATTTATGATACACTCAAACAATGTGCTCTCATCTCTAAATCTGC 23400 Query 104458 TGGGGGTATTGGGAT-GCACATCCATGATGTGAGAGCCAATAAATC-TCGTATTCGGGGG 104515 || || ||||| | ||| | || | | ||| | || | | | ||| || Sbjct 23399 AGGAGGGATTGGTGTAGCAGTTAGCTG-TATTAGATC-AACAGGTAGTTACATTGCTGGA 23342 Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575 ||||||||| | ||| |||| || | || ||||| | || | ||| ||| || ||| Sbjct 23341 ACAAATGGTAACTCAAATGGCCTTGTGCCGATGCTGAGAGTGTACAACAACACCGCACGC 23282 Query 104576 TATGTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || || | |||| ||| | ||| ||| || | || | || || ||||||||| Sbjct 23281 TACGTGGACCAAGGTGGCAATAAACGACCGGGTGCTTTTGCCATATACCTGGAGCCATGG 23222 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGG 104692 ||| ||| | | || ||||||||| || ||| ||| | |||||| | || Sbjct 23221 CACTTTGATGTGTTTGACTTCCTTGAGCTGAAGAAGAACACTGGTAAAGAGGAGCAGAGG 23162 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 || || ||||||| || || ||||| || ||||| ||||||||||| || || | Sbjct 23161 GCACGAGACCTCTTCTATGCCCTATGGATCCCTGATCTGTTCATGAAGAGGGTGGAAAAC 23102 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCC-AGACAAGGCACCTGGTCTCTCCGA-TGCCGTGG 104810 | | |||||||| | || || || | || ||||| | || || | || Sbjct 23101 AACCAGGACTGGTCTCTGATGTGCCCCAGTGAGTGC-CCTGGGTTGGATGAGTGTTGGGG 23043 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | ||||||||||| || ||||| | || || | || ||| | | || ||| || Sbjct 23042 G-GAGGAGTTTGAGAAGCTCTACACTCAATATGAACAGGAGGGTAGAGTGAA-GCG--GG 22987 Query 104871 TGC-CA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 || || ||| | ||||| | || || || ||||||| || || || || |||| Sbjct 22986 TGGTCAAGGCTCAGCAGTTGTGGTATGCCATCATCGAGTCTCAGACAGAAACAGGAACAC 22927 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 | |||||| | |||||||| ||||||||| |||||||| || |||||||||| | Sbjct 22926 CTTACATGTTGTACAAAGATGCCTGTAACAGGAAGAGTAACCAGCAGAATTTGGGCACCA 22867 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 |||| | || | || || || || |||| | |||| ||||||||| ||| | Sbjct 22866 TCAAATGCAGTAACTTGTGCACTGAGATTGTGGAGTATACAAGCAAAGATGAAGTGGCCG 22807 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | |||||| | || || || |||||| || |||||| ||| || | || |||| Sbjct 22806 TCTGTAACTTGGCCTCCATTGCTCTCAACATGTATGTTACTCCGGA---ACGCACCTTTG 22750 Query 105108 ATTATGAAAAACT--CCACGAAGTTACGAAA---ACTGTCACCAAAAACCTAAACAGAGT 105162 | | |||| || || || || || ||| | ||| | |||||| |||| | Sbjct 22749 ACTTCAAAAAGCTTGCCTCG--GTCACTAAAGTAATTGTAAG---AAACCTCAACAAGAT 22695 Query 105163 TATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCC 105222 ||||| | || | ||||| ||| || || || || | | | ||| | || Sbjct 22694 CATTGACATTAACTACTACCCAGTTCCTGAAGCAGAGAATTCAAACAAGCGCCACAGGCC 22635 Query 105223 AATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 105282 ||| || | ||||| |||||||| || |||| ||||| || || | ||||||| Sbjct 22634 AATCGGGATTGGTGTGCAGGGTCTTGCAGATGCCTTCATCCTCATGCGTTATCCATTTGA 22575 Query 105283 TTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCT 105342 | ||||| || | ||| | || ||||||||||| || | || || || Sbjct 22574 AAGCCCTGAAGCCCAGCTGCTGAATATCCAGATCTTTGAGACCATCTACTATGCTGCCCT 22515 Query 105343 TGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 105402 ||||| || | ||||||||||| ||||| || ||||| || | || ||||| Sbjct 22514 GGAGGCAAGCTGGGAGTTGGCAGAAAAAGATGGGCCTTATGAGACATACCCAGGCTCTCC 22455 Query 105403 AGCTTCACAAGGGG--TGCTTCAATTTGATATGTGGGAAGGTGAGACCA---AGCTTCAC 105457 || | | || || | || || | ||| ||||||||| | | ||| |||| | Sbjct 22454 AG--TGAGTAGAGGCATTCTGCAGTATGACATGTGGGAAAAGGTGCCCACTGAGCT---C 22400 Query 105458 TACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCT 105516 | |||||| ||||| || ||||| || | | ||| | | |||||||| | Sbjct 22399 TGGGACTGG-AAGCTGCTTAAGGAGAAGATTGCTAAACACGGTGTGAGAAACAGTCTGTT 22341 Query 105517 CATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGA 105576 |||| || ||||| ||||||||||| |||||||| | || || ||||| | | | || Sbjct 22340 GTTGGCCCCCATGCCCACAGCCTCCACAGCACAAATACTCGGCAACAATGAGTCCATCGA 22281 Query 105577 ACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAA 105636 | ||||||| | |||||||| | ||| |||| | ||||||||| |||||| || Sbjct 22280 AGCCTACACCAGCAACATCTACACACGTAGAGTCCTCTCTGGAGAGTTTCAGATTGTAAA 22221 Query 105637 CAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 105694 | ||||| || | ||||||| || || || ||| | |||| |||||| || Sbjct 22220 CCCACATCTGCTGAAGGACCTCACTGAACGGGGGCTGTGGAACGAGGAGATGAAGAAT 22163 >seq19576 Length=429644 Score = 82.4 bits (90), Expect = 9e-11 Identities = 85/109 (78%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 |||||||| ||| ||||| || ||||||||||| ||||| ||| ||||||||||| Sbjct 416901 GCATTTGCAGCTGTAGAGGGAATTTTCTTCTCTGGATCCTTTGCCGCCATTTATTGGCTG 416960 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTT-CTCCAACGAGCTTATC 94923 || ||| | ||||| ||||| || || | ||| ||||| || |||||| Sbjct 416961 AAAAAGAGGGGTCTAATGCCTGGGCT-TACTTATTCCAATGAACTTATC 417008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582920598556880