Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11038 178 1e-39 seq21590 87.8 2e-12 >seq11038 Length=78219 Score = 178 bits (196), Expect = 1e-39 Identities = 517/789 (66%), Gaps = 14/789 (2%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 || |||| ||| || |||||| || || ||| | | ||| | || || |||||| Sbjct 22791 GAGGCCAAGTTACAGACGGCCACTTCATCTTTGCTTGTATACTCCACAATCTCAGTGCAC 22850 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || ||| | ||||||||||| | |||| |||||| |||||| ||||||||| || Sbjct 22851 AAGTTACTGCATTTGATGGTGCCCAAATTCTGCTGGTTACTCTTCCTGTTACAGGCATCT 22910 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||||| ||||||| || || || || || |||| || || | | | | ||| | Sbjct 22911 TTGTACAACATGTAAGGTGTTCCTGTTTCTGTCTGAGACTCGATGATGGCATACCACAAC 22970 Query 79237 TCCCGGGCCCGGACAACCTTCTTGTACCGACCCT---GTGCGACGTACGTCCGGTACAAC 79293 | | | ||| ||| ||| ||| | ||||| || | | || ||| | | Sbjct 22971 TGCTGAGCCTTGACCACCCGCTTCACTCTACCCTCCTGTTCATATTGAGT---GTAGAGC 23027 Query 79294 TCGTTGAAAGCCTCCCCATAGACA-TCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAG 79352 | | || ||||||| | ||| || || || |||||||| ||||||||||| Sbjct 23028 TTCTCAAACTCCTCCCCCCA-ACACTCATCCAACCCAGGGCACTCACTGGGGCACATCAG 23086 Query 79353 GTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT 79412 |||||||| || || || ||| ||| |||||| || || |||||||| ||||| Sbjct 23087 AGACCAGTCCTGGTTGTTTTCCACCCTCTTCATGAACAGATCAGGGATCCATAGGGCATA 23146 Query 79413 GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTC 79472 ||||||||| || | | |||||| | || |||| |||||| || ||||| Sbjct 23147 GAAGAGGTCTCGTGCCCTCTGCTCCTCTTTACCAGTGTTCTTCTTCAGCTCAAGGAAGTC 23206 Query 79473 CATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCC 79532 | | || |||||| |||||||| || ||||| || | |||| || || ||| Sbjct 23207 AAACACATCAAAGTGCCATGGCTCCAGGTATATGGCAAAAGCACCCGGTCGTTTATTGCC 23266 Query 79533 GCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTC 79592 || |||| ||||| || || ||||||||| | |||| ||||| ||||| | ||| | Sbjct 23267 ACCTTGGTCCACGTAGCGTGCGGTGTTGTTGTACACTCTCAGCATCGGCACAAGGCCATT 23326 Query 79593 GGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGC--AGTG- 79649 | | || || || || || |||| | | | || | ||| | || Sbjct 23327 TGAGTTACCATTTGTTCCAGCAATGTAACTACCTGTTGATCTAA---TACAGCTAACTGC 23383 Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709 | || || || || | | || |||||| | || || | ||||| || || || || Sbjct 23384 TACACCAATCCCTCCTGCAGATTTAGAGATGAGAGCACATTGTTTGAGTGTATCATAAAT 23443 Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTT 79769 ||| || || ||| |||||||| || | |||||||||||| || | ||| || | || Sbjct 23444 GCCATCAATGCTGTCATCCTTCATGGCCAGCAGGAAGCAGCTGGAGAGCTGGGGTCTATT 23503 Query 79770 CGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATC 79829 || || |||||||| || || || | || || ||||| |||| | || ||| | Sbjct 23504 GGTGCCTGCGTTGAACAGAGTGGGAGAGGCATGAGTGAACCACTTCTCAGACAGCAGGTT 23563 Query 79830 GTACGTCTC 79838 ||| ||||| Sbjct 23564 GTAGGTCTC 23572 Score = 150 bits (166), Expect = 2e-31 Identities = 344/515 (67%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| || || | || || || |||||| Sbjct 23572 GAGACCTACAACCTGCTGTCTGAGAAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAAC 23513 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || || | || ||| | || ||||| ||||| |||| ||||||||||||||| Sbjct 23512 GCAGGCACCAATAGACCCCAGCTCTCCAGCTGCTTCCTGCTGGCCATGAAGGATGACAGC 23453 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 ||||| ||||| || || || ||||| | || || | |||||| || | | || || Sbjct 23452 ATTGATGGCATTTATGATACACTCAAACAATGTGCTCTCATCTCTAAATCTGCAGGAGGG 23393 Query 19346 ATCGG-GATCCACT--GCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 || || | || | ||| ||| | || | |||| || ||| || || Sbjct 23392 ATTGGTGTAGCAGTTAGCT---GTATTAGATCAACAGGTAGTTACATTGCTGGAACAAAT 23336 Query 19403 GGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTC 19462 || | | || | || || ||||| | || | ||||||||| || | ||||| Sbjct 23335 GGTAACTCAAATGGCCTTGTGCCGATGCTGAGAGTGTACAACAACACCGCACGCTACGTG 23276 Query 19463 AACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCG 19522 |||| || ||| ||||| ||| | || ||||| ||||| |||||||||||| Sbjct 23275 GACCAAGGTGGCAATAAACGACCGGGTGCTTTTGCCATATACCTGGAGCCATGGCACTTT 23216 Query 19523 GACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGC 19582 || || | || ||||| || ||| |||| ||| | |||||| | | || Sbjct 23215 GATGTGTTTGACTTCCTTGAGCTGAAGAAGAACACTGGTAAAGAGGAGCAGAGGGCACGA 23156 Query 19583 GACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAA 19642 ||||||||| ||| | ||||| || || || |||||| ||| ||| || || || | Sbjct 23155 GACCTCTTCTATGCCCTATGGATCCCTGATCTGTTCATGAAGAGGGTGGAAAACAACCAG 23096 Query 19643 GAATGGCACCTGATGTGCCCGCACGAATGCCCTGG 19677 || ||| ||||||||||| || |||||||| Sbjct 23095 GACTGGTCTCTGATGTGCCCCAGTGAGTGCCCTGG 23061 >seq21590 Length=39673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 || |||||||| |||| |||||||||||||||||||||||||| ||||| || | ||| Sbjct 39310 AGTTGTTTCCTTTTGGCCATGAAGGATGACAGCATTGAGGGCATTTACGACACCTTGAAG 39369 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 |||| || | ||||||||| | | ||||| || || Sbjct 39370 CAGTGTGCTCTCATCTCCAAATCTGCTGGGGGCATTGG 39407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548204859197280