Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11038 147 2e-30 seq21532 107 2e-18 >seq11038 Length=78219 Score = 147 bits (162), Expect = 2e-30 Identities = 459/705 (65%), Gaps = 8/705 (1%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || || ||| | || || ||||||||||| || || ||| || ||| | Sbjct 23548 AAGTGGTTCACTCATGCCTCTCCCACTCTGTTCAACGCAGGCACCAATAGACCCCAGCTC 23489 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| |||| |||||||||||| || || ||||| || || || ||| Sbjct 23488 TCCAGCTGCTTCCTGCTGGCCATGAAGGATGACAGCATTGATGGCATTTATGATACACTC 23429 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCACT--GCTCGAAC 53443 || | ||||| | |||||| || | | || || || ||| | || | ||| | Sbjct 23428 AAACAATGTGCTCTCATCTCTAAATCTGCAGGAGGGATTGGTGTAGCAGTTAGCTGTA-- 23371 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | | | | || | || || || || || | | |||| | ||||| Sbjct 23370 -TTAGATCAACAGGTAGTTACATTGCTGGAACAAATGGTAACTCAAATGGCCTTGTGCCG 23312 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | ||||||||| || || ||||| |||| ||||| || || | Sbjct 23311 ATGCTGAGAGTGTACAACAACACCGCACGCTACGTGGACCAAGGTGGCAATAAACGACCG 23252 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 || | || ||||| ||||| ||||| |||||| || | | || || || |||||| Sbjct 23251 GGTGCTTTTGCCATATACCTGGAGCCATGGCACTTTGATGTGTTTGACTTCCTTGAGCTG 23192 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATT 53683 ||| ||| | || ||| | | || ||||| || || || ||||| Sbjct 23191 AAGAAGAACACTGGTAAAGAGGAGCAGAGGGCACGAGACCTCTTCTATGCCCTATGGATC 23132 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || || || |||||| | | |||||| || || |||| |||| ||||||||||| | Sbjct 23131 CCTGATCTGTTCATGAAGAGGGTGGAAAACAACCAGGACTGGTCTCTGATGTGCCCCAGT 23072 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTA 53802 |||||||| || | | | |||| | || ||||||||| | || | || || Sbjct 23071 GAGTGCCCTGGGTTGGATGAGTGT-TGGGGGGAGGAGTTTGAGAAGCTCTACACTCAATA 23013 Query 53803 CGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCT 53862 | | |||| | ||| | ||||||||| | || | ||| |||| ||| | Sbjct 23012 TGAACAGGAGGGTAGAGTGAAGCGGGTGGTCAAGGCTCAGCAGTTGTGGTATGCCATCAT 22953 Query 53863 CAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAA 53922 | || ||| || || ||||| || ||||||| ||||| ||| | ||| ||| Sbjct 22952 CGAGTCTCAGACAGAAACAGGAACACCTTACATGTTGTACAAAGATGCCTGTAACAGGAA 22893 Query 53923 GAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||| |||||| |||| | ||| |||||||| || ||||| || Sbjct 22892 GAGTAACCAGCAGAATTTGGGCACCATCAAATGCAGTAACTTGTG 22848 >seq21532 Length=170428 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| |||||||| |||||||||||| || || |||||||| || Sbjct 3372 AGTGAAAATATATCGAGGGCTTGCAGAGTCCTTGCCACCATGCAGCCGAGTACCGAACTG 3313 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAA 117417 ||| || | |||||| |||||||||||| ||| ||||| ||||||||||| Sbjct 3312 ACCAAGAGGTTGCAAGAGATTCAGGTTGTTGCTGCCGACAAAATTTTGAGCCAA 3259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546896822587600