Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Periophthalmodon_20schlosseri_20[genbank_20GCA_5F000787095.1_202014- 12-02] 46,662 sequences; 679,761,122 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq27510 150 2e-31 seq44130 131 2e-25 >seq27510 Length=34911 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| || || || ||||| || ||| | || || || | || Sbjct 30134 ATGCAAATTTTTGTGAAGACCCTGACTGGGAAGACCATCACTTTGGAAGTGGAACCTAGT 30075 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || |||||||| ||||| || ||||| |||||| Sbjct 30074 GACACCATTGAGAATGTCAAGGCAAAGATCCAGGACAAAGAGGGTATCCCTCCTGACCAG 30015 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||| ||||||||||| || || |||| ||| ||||| | ||||| || Sbjct 30014 CAGAGGCTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACCCTCTCTGACTACAAC 29955 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | || ||||||||||| || || | || ||||| Sbjct 29954 ATTCAGAAGGAATCCACCCTCCACTTGGTGCTGCGT 29919 Score = 147 bits (162), Expect = 2e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| || || || || || || ||| | || |||||| | | Sbjct 30363 AATGCAGATCTTTGTTAAGACCCTGACTGGTAAAACCATCACTTTGGAAGTTGAGCCGAG 30304 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| ||||||| || || || || ||||| || || ||||| ||||| Sbjct 30303 TGACACAATTGAAAACGTGAAGGCCAAGATCCAAGATAAGGAAGGTATCCCTCCTGACCA 30244 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || |||||||||||||||||||| || |||| || || || | ||||| || Sbjct 30243 GCAGAGGCTGATTTTTGCTGGTAAGCAACTAGAAGATGGCCGCACTCTCTCTGACTACAA 30184 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| ||||| ||||| || || Sbjct 30183 CATCCAGAAGGAGTCCACCCTCCA 30160 >seq44130 Length=14217 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 || || || ||||| || || || || || ||||| || ||||| |||| | | | Sbjct 12059 ATACAGATTTTTGTGAAAACCCTCACTGGGAAGACCATCACTCTGCAGGTCAAACCCAGC 12000 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || |||| | | || || |||||||||||||| || ||||| ||||| ||| Sbjct 11999 GACATCACTGAAAATGTTATAGCCAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 11940 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||| ||| ||||| || || |||| || ||||| | ||||| || Sbjct 11939 CAGAGGCTGATCTTTGTTGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 11880 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || |||| ||| ||||| || ||| ||||||| | ||||| || Sbjct 11879 ATCCAGAAAGAATTCACCCTTCACCTTGTCCTGCGTCTCTGGGGTGGCCA 11830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569977752201440